RNA id: TU60964


Basic Information

Item Value
RNA id TU60964
length 301
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G51564
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23457009 ~ 23457309 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccttatgtttactTTCAGCAACTTATGTTGTcaatcttttgcactactgtcataagattcactttttttattagtaCTATGTGCTAGTCGGCactgcactgtaactcactgtgcccattgtcttgttttgatagtttttgtactgtcttgtgccttctgcacatgtttgcactgtgcactttatgtaaagaTATGTAATGTCTActgtagttttgtgttttgttttatgtagcactttGTTCCTAGAGgaacattgttttgtttcactgtgtactacctagctgtatatggttgaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60900 lncRNA upstream 95521 23277923 ~ 23361488 (+) True G51511
TU60889 lncRNA upstream 181668 23207115 ~ 23275341 (+) True G51501
TU60805 lncRNA upstream 311872 23072956 ~ 23145137 (+) True G51425
TU60806 lncRNA upstream 380538 23074730 ~ 23076471 (+) True G51426
TU60802 lncRNA upstream 386296 23070321 ~ 23070713 (+) True G51422
TU60961 lncRNA downstream 2304 23459613 ~ 23460865 (+) True G51561
TU60965 lncRNA downstream 6944 23464253 ~ 23465415 (+) True G51565
TU60968 lncRNA downstream 17619 23474928 ~ 23475797 (+) True G51568
TU60969 lncRNA downstream 21735 23479044 ~ 23480048 (+) True G51569
TU60970 lncRNA downstream 27169 23484478 ~ 23484833 (+) True G51570
XM_026939527.2 mRNA upstream 6018 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 180693 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 181369 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 355875 23071308 ~ 23101134 (+) True spred2b
XM_026941717.2 mRNA upstream 387365 23052228 ~ 23069644 (+) True actr2b
XM_034303047.1 mRNA downstream 347628 23804937 ~ 23834851 (+) True slc29a3
XM_034302983.1 mRNA downstream 410842 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA downstream 412335 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA downstream 428167 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 428167 23885476 ~ 23999400 (+) False lrrfip2
TU60962 other upstream 1460 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 341970 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 670504 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1433198 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2451490 21005450 ~ 21005519 (+) True trnae-cuc_10
TU61166 other downstream 239723 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 336371 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 597932 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3528669 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3740600 27197909 ~ 27207245 (+) False znf451

Expression Profile