RNA id: TU60968


Basic Information

Item Value
RNA id TU60968
length 870
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G51568
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23474928 ~ 23475797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaataaaaattgaattgaatttcccTTATCAGCAGTAAATCAGTCAGTTCTTGTCCATCAGCGGTGCGGAAACAATGAATGAGCCTACTCTGACAATTCTTCTTTTCCAAACTGAAGAAGAACTTGGAGGGTGCATCCATTTCTGTTGTGCACTGAAATCTCGATCTAATCAATGCCCCCTGTGCTCTAATCCCCAGCAGACCAACTAATAAATCTCTTTTGTCCTTGAGTGCCTGAATGTGGCCTCGATCTTCTGTGGACTCACACAAAGCCTGGATTGTTGTCTTTAGTCACATTAAAGGTGTCTTGATTACAAAATTGCTTGGTTTGAACTTTCGCTACATCCCACCACTGTTGCgaagaggtaaaaaaaatttttctatCTGCcatgcttttgtgttttattccatttataaaAACAGGTCCGATTAACAAAGAATGGTCCAAAAAACCTACTGGGTACATGCTACAGAATTTAAAAATCTGGACGGGCTgctgaaaacaataaaatctatCTAGCCTAGCTAAAGATATGTAATTATGTTTAGTATGTGCCCATGAATATTGCCTTACATTGCTGTGCTTCGATCACCACACATCCTCCAACTCATAAGTCtcaacaaaacatttcattagTTTTCTTGAATGAACATGAGGTTCCAGATGATTTCTATCAATGTCATgaaaagtgcagttaaagtctcccccattattaaaaaatctgAGGAGGCCCATCCTGAAATTGTATTTGCTagctttctatctctctcttggTATGACTGGTGCATAAACATAatgaactttattttaaaaagcacctttaaaaaggcctctcgCTTTACATGAgagtatataaatatgtataacaa

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60965 lncRNA upstream 9513 23464253 ~ 23465415 (+) True G51565
TU60961 lncRNA upstream 14063 23459613 ~ 23460865 (+) True G51561
TU60964 lncRNA upstream 17619 23457009 ~ 23457309 (+) True G51564
TU60900 lncRNA upstream 113440 23277923 ~ 23361488 (+) True G51511
TU60889 lncRNA upstream 199587 23207115 ~ 23275341 (+) True G51501
TU60969 lncRNA downstream 3247 23479044 ~ 23480048 (+) True G51569
TU60970 lncRNA downstream 8681 23484478 ~ 23484833 (+) True G51570
XR_004577699.1 lncRNA downstream 136808 23612605 ~ 23613936 (+) False LOC117596653
TU61111 lncRNA downstream 136808 23612605 ~ 23616839 (+) True LOC117596653
XR_004577698.1 lncRNA downstream 136845 23612642 ~ 23613936 (+) False LOC117596653
XM_026939527.2 mRNA upstream 23937 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 198612 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 199288 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 373794 23071308 ~ 23101134 (+) True spred2b
XM_026941717.2 mRNA upstream 405284 23052228 ~ 23069644 (+) True actr2b
XM_034303047.1 mRNA downstream 329140 23804937 ~ 23834851 (+) True slc29a3
XM_034302983.1 mRNA downstream 392354 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA downstream 393847 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA downstream 409679 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 409679 23885476 ~ 23999400 (+) False lrrfip2
TU60962 other upstream 19379 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 359889 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 688423 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1451117 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2469409 21005450 ~ 21005519 (+) True trnae-cuc_10
TU61166 other downstream 221235 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 317883 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 579444 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3510181 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3722112 27197909 ~ 27207245 (+) False znf451

Expression Profile