RNA id: TU60970


Basic Information

Item Value
RNA id TU60970
length 356
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G51570
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23484478 ~ 23484833 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAAAGTTTGTGCAAATTCAAAAGCAACTCACTCCAATATCCTCAGAGGAGGTGGGAAAGAAAAGTTGCAGCAATTATCCACCAAATCATGGAAGCGTGCATTTACAGAGACATCCACTGAACTTCCATAACTATGACCCAATGAgcttgctgtctgtctgtagtTACTGTAACTGAGGCTTGTCAACTGCATAATATCCTACAGGTTTAACTCAACATTTTCTATCAGTAATGAGTGATGGCACTTGTGGCTGATCTAACTGAGACTCATTGATGGAAACGGGCAGCATAGACACGTGAGACAATTATTTTATAGACTCAACCTGAGGGACCTTCTTGCAGAGTGAAATAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60969 lncRNA upstream 4430 23479044 ~ 23480048 (+) True G51569
TU60968 lncRNA upstream 8681 23474928 ~ 23475797 (+) True G51568
TU60965 lncRNA upstream 19063 23464253 ~ 23465415 (+) True G51565
TU60961 lncRNA upstream 23613 23459613 ~ 23460865 (+) True G51561
TU60964 lncRNA upstream 27169 23457009 ~ 23457309 (+) True G51564
XR_004577699.1 lncRNA downstream 127772 23612605 ~ 23613936 (+) False LOC117596653
TU61111 lncRNA downstream 127772 23612605 ~ 23616839 (+) True LOC117596653
XR_004577698.1 lncRNA downstream 127809 23612642 ~ 23613936 (+) False LOC117596653
XR_004577700.1 lncRNA downstream 127809 23612642 ~ 23613936 (+) False LOC117596653
XR_003404512.2 lncRNA downstream 155519 23640352 ~ 23651127 (+) False LOC113544527
XM_026939527.2 mRNA upstream 33487 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 208162 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 208838 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 383344 23071308 ~ 23101134 (+) True spred2b
XM_026941717.2 mRNA upstream 414834 23052228 ~ 23069644 (+) True actr2b
XM_034303047.1 mRNA downstream 320104 23804937 ~ 23834851 (+) True slc29a3
XM_034302983.1 mRNA downstream 383318 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA downstream 384811 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA downstream 400643 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 400643 23885476 ~ 23999400 (+) False lrrfip2
TU60962 other upstream 28929 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 369439 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 697973 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1460667 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2478959 21005450 ~ 21005519 (+) True trnae-cuc_10
TU61166 other downstream 212199 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 308847 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 570408 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3501145 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3713076 27197909 ~ 27207245 (+) False znf451

Expression Profile