RNA id: TU60979


Basic Information

Item Value
RNA id TU60979
length 3945
RNA type TUCP
GC content 0.39
exon number 2
gene id G51576
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23447908 ~ 23454217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAATCGAGTGGAACCAATTGCCTTCAGAAGTCACCTAATTAGTAAATAGAGTCCacctgtgtgtaatttaatctcagtataaatacagctGTTCTGTGAAGCCCTCAGAGatttgttagagaacattagtgaacaaacagcatcatgaagaccaaggaacaCACCAGACAGGTCAGGAATAAAGTTGTGGAGAAGTCTAAAGCAGGGTTAGGTTATAAAACAATATCCCAAGCCTTGAACATCTCACGGAGCACTGTAGAATCCATCATCCGAAAATGGAAAGAGTATGGCACAACTGCAAACCTACCAAGACATGGCCGTCCACCTAAACTGACAGGCCGGGCAAGGAGAGCATTAATCAGAGAAGCAGCCAAGAGGCCCATGGTAACTctggaggagctgcagaaatCCACAGCTCAGGTGGGAGAATCTGTCCACAGGACAACTATTAGTCGTGCACTCCACAAATCTGgcctttatggaagagtggcaaGAAGAAAGCCATTGTTGAAAGAAAGCCATAAGTACTCCCGTTTGCAGTTTGCGACAAGCCATGTGGGGGACACAGCAAACGTGGAAGAAGGTgctctggtcagatgagaccaaaatttaaCTTTTTGGCCTAAATGCAAAACGCTATGTGTGGCGGAAACCTAACACTGCACATCATCCTGAACACACCATCCCCGtcgtgaaacatggtggtggcagcatcatgttgaggggatgcttttcttcagcagggACAGGGAAGCTGGTCAGAGTTGATGGGAAGATgaatggagccaaatacagggcaatcttAGATGAAAACCTGTTAGAGTCTGCAAAAGACTTGAGACTGGGGCAaaggttcaccttccagcaggacaacgACCCTAAACATACAGTCAGAGCTACAATGGAATGGTTTAGATCAAAGCATATtcatgtgttagaatggcccaATCAAAGTCCAGACCTAAATACAATTGATAATCTGTGGCgagacttgaaaattgctgttcacagACGCTCTCCATCCAACCTGACTAAGCTTGATCTATTTTGctaagaagaatgggcaaaaatttcACTCtctagatgtgcaaagctggtagAGACATACCCCAAAAGACTTGCAGCGAAAGGTGGTTCTACAAAGTATTGACTCAGAGGGGCTGAATACAAATGCACGCcacacttttcagatatttatttgtaaaaaatttgacaccatttatcattttccttccacttcacaATTACGTGCCATCACATCGGTCTatcacataaaatcccaataaaatatatttttgtttgagGTTGTAACGTGACAAAATGTGGTTCAGTGGgtatgaatacttttgcaaagcactgtgtgtgtgtgtgcgtgcgtgtatgcatatatatatatatatatacacacacagtgtaaattGATGATATTTTATCTTCTGGgcaacatgtaaatatcttatgtagcttctgaagggcaatactaaataaaaaaaaaaaaaaaagatatttaaataacaatataacaacaatttacaccgatcatcctgttcaaaattttacacccCCTGGGTCTTAATGTATTGTGTTGCCTTTATTGAGAATCAATGAATGTTTGCATCTTTTGCATAAGTTGTGTATGAGTCTCTCAGTTGTCCTAAGCGTGAAAAgttggatctcaaaatcatatagccactgttgcaAAGGGGTCAAACATGCAGAAGATGctgaagaaaacaaataatgtgCAGTACCTGGAAGATTTTTCTTAAGAAGAGTGGgaagtttaactgctcaggacaaacaaaggactcacacaaaacataaaaacaaaaacctttgATTATCCAGGTAACaatacacttgattcttaataatgtgtatgtaaacttttgaactggttcatttgtgtaaattcagttatttttttgtcttgtggactacatgtaaacatctgttatgtgaaatagcttcaTCAgagcagtactaaataaaaaacaaaatgcaatttttatgaccccgcttattgttgtttttttttttaattattaaaattttgcagattctgcaaggcatatgtaaactcATGACcacaactgtatatatacacactgaccaagccaccttcttccattgctccatggtccagttctgattcTCATCACTTTTGGTAGGcattaaccactgcatactgggaatacccacaagacctgccgttttggagatgctctgacacagtcatctagccatcacaatttggcccttgacAAAGATGCTCAGATCCTTAGGGGTCACTTAGGACCCCTGAACCACCAGGGGGACCCATCATTCTTAAAGAAGTAGTATGCAAAAAAAGGACCCTTCCTATTACTATTTAGTGAAAGTTTATGTATAAGGCAGTCATAGGTACCCCCTTGTGGTGAATGTAAAGAACTTAAGCTGCAATGTTACGAGATGTTATGTTACGAAATTAGTTAACTAATGTAACTAATGCCAGAAAATCACAAAGAAGCAGCAATTATGAGAAGTTCAAATCTATCCAAAACACCGGTAAGAAACTAATGCTAGTTATTTAAATTTAGTCAGTTTTCCTCTTTCTTGCTTCCACTTATTGATGTAACTGAAATGGAAAACGTTAgctttaactagctagctagtgtctGGACTACGAAGAGGTAGGCTAACACATGTTAAGTTGCTATGAGTTATAAAAACAGTAGCCTGTTGACTTAAGATAATCGCCACTCAGGTGGTCAAAGCATCAATCACCTATAGTTCTTTTCAGAACTAAAAAGCAAGTCACAAAAAGACCTGAAAATAGCCCGAAAATTTGGAcactggaaaagggagacacatttttcttctttttctgtctctgggTGAGAAACATGTTCACAGTGgcaatgtaatattttatgtacatGTGTTTTTCTAAAGCTGTTGTTTTATTATGATTTACATGAAGATTTGATCATGGCATCTTTCTTGCAGAAAACTAGATAATTCCAAAGGTTTCACAAACTTGCTCTCACAAATGTACCTCAGCCTAAATCTGTCAACACACCATTACAGTCCCCACCACCATATTATGTGATACAAAGGTGGGGGGCAAAAAAAGCAAACCATTGTAGCAAGAAGGTGCTGGCAGCTATAGACTTAAGGAATGTAACCGAAGAGTTATTTGGAGAAAGTTCATTGCATTGagttctgtttaattttattttaaaaaaaaaaaaaaaaaaaggttgataaGTGTTTTGACACAAACTAGCAACTTATATTGAGGAAGTATGCTGGTGGTTTATGGTGGCAGCTagatgaaatttaaataattgaaaaaaggTCAGTAGGCAGAAATCAGACTCAAAGACCTTAACTTATTCCATTAGATGTCAGAGAGCAGATAGCACTCATTTTAAGAAGTCAGGCTCCTCTGTGGTGGGCTATGTGGTAGCACCAGACTTCTGAGTGGCTTGCAGTCGCAATCTCCTCCTTGCCATAGCCTCCCGCTTCTTCCTCTCAATCTCAGCAGCAGAGCACTTCACTGCTGGCTGCACTGCGATAAACACTACAGAAGcaaacattcatgcagttatctaatcagtcaatcttgtggcagcagcacagtgcaaaaaatcatacagatacaggtcaaaagcctcaggtaatgttcacatcaaacatcagcctGAAGAAAAAGCATGATCTCTGGAACTTTGATCGTAGCATGGATGTTGGTAACAAATGGgctggtttcagtatttcagaaactgctgatctcattttcagacacaacagtctctagagtttacagggaatggtgcgaaaaacaaaaaacactgagtgagcgacagttctgtgggtggaaacgccttatTGATACAGAaaatctcagcatgcacaaaacatcagagatgaatgggctacaacaacagaagaccacgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60957 lncRNA downstream 33967 23413680 ~ 23413941 (-) True G51557
TU60916 lncRNA downstream 181572 23260196 ~ 23266336 (-) True G51523
XR_003403951.2 lncRNA downstream 229151 23215848 ~ 23218757 (-) True LOC113539667
TU60844 lncRNA downstream 377187 23070343 ~ 23070721 (-) True G51462
TU60769 lncRNA downstream 557401 22890297 ~ 22890507 (-) True G51390
TU60980 lncRNA upstream 3283 23457500 ~ 23457991 (-) True G51577
TU60982 lncRNA upstream 12729 23466946 ~ 23470699 (-) True G51579
TU60983 lncRNA upstream 17450 23471667 ~ 23472219 (-) True G51580
TU60984 lncRNA upstream 18082 23472299 ~ 23474091 (-) True G51581
TU60987 lncRNA upstream 27906 23482123 ~ 23482354 (-) True G51584
XM_034303119.1 mRNA downstream 398784 23032198 ~ 23049124 (-) True phf10
XM_026937353.2 mRNA downstream 470265 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 470265 22964720 ~ 22977643 (-) True fam120b
XM_026937357.2 mRNA downstream 513047 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 524168 22913819 ~ 22923740 (-) True apmap
XM_026941612.2 mRNA upstream 218202 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA upstream 218202 23672419 ~ 23679731 (-) False c1d
XM_026942047.2 mRNA upstream 272935 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 272935 23727152 ~ 23750761 (-) True kifc1
XM_034303048.1 mRNA upstream 383722 23837939 ~ 23840860 (-) True mgme1
XR_003404067.2 other downstream 659125 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 659125 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 1346525 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1497719 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 1551631 21896184 ~ 21896277 (-) True trnai-uau
XR_004577819.1 other upstream 563047 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 998902 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 1017486 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1228029 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 2455801 25910018 ~ 25910119 (-) True LOC113542183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU108786 True 1244 TUCP 0.44 2 CI01000016 4272636 ~ 4273905 (+)
rainbow trout (Oncorhynchus mykiss) TU108786 True 331 lncRNA 0.39 1 NC_048565.1 88502986 ~ 88503316 (+)
rainbow trout (Oncorhynchus mykiss) TU2285860 True 1607 lncRNA 0.42 2 NC_048590.1 11644263 ~ 11653638 (-)
eurasian perch (Perca fluviatilis) TU248535 True 694 TUCP 0.47 1 NC_053129.1 10520717 ~ 10521410 (-)
tiger barb (Puntius tetrazona) TU108786 False 1535 lncRNA 0.47 2 NC_056708.1 349308 ~ 397101 (+)
mexican tetra (Astyanax mexicanus) TU248535 True 869 lncRNA 0.42 2 NC_035917.1 9845003 ~ 9852352 (+)