RNA id: XR_004577532.1


Basic Information

Item Value
RNA id XR_004577532.1
length 3209
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC113537953
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23668808 ~ 23672150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taactcatgggaactctcaatatgtggtgAAAAGAagtgtcaatgcaagtgaaagaggccatcattaggctgaaaaaacaaaacacacctatcggagagagagcagaaacttTATGGGATGTCGGTCCATggcagggcaccatgtacacacacatttgcacactcaCTCACGCACCTACCAGCAAGTTTTTGGGAAGTGAgatgaaactggagaacctggattGAACCCATACCATGGGCACACAGAGATAATGTGAtactccacacagatagtaacctaagctcaggatcaaactggggactgTGGAGCGGTGAAGTTGCTCCTTTGTGCTGCTCAAAGTAAAATCAGTCActaacatttatgtttttaaaataactaaaatataaGTTATAAGTTAAAAGACTTAATAGTCTATTTTAGCCtctaaaaagtgtgtaaaaatactaaaatccACTATAATGAGCTGTAAATGGCTTTGCAGTGCCCTTGTTGTGGTTAAGCATTAGAGAGAGACAATGTGTGCAGTGGTACAGGACACCCAAAAATAACAGAATGTggcaaaaaatacattttattcaaactttgaccaaaaatacagaaaatgctgttttgaacagtatatatgttttattcagtttagGACATCTGCTAGTTGTTCACCAAATGACTCATTTTAAATGTGCAAATCTTTGCTAATTTGGATATTAAAGTCTGTTGTCCCTTTTGATTTAGAAAAATTCGGCCAGAAACATGTCTGCATGAGCCATTTTGGATTGTGAGAAATagaaataatgttttatgttaCACTGGAGTAAAAGTGTTGTAAATTTGCCACCAAATTGTTTGAAGggagttttatatttttctaagGGCTGCCTTAAATAAACTCTCAGCTAGTGTGAACAcaatgcatgaaagggttaaaggaTCTTTTGTCAGAAATGTCACAAAGAAGTTTGTTGACTTGCATCACTAAGCTTGTTGCAGAAAACAAACATTCTCAGACATCCCATTGATGCCCTTGAAGCCTTTTTTTGTGATCATATGTacttacatgtaaaaaaaaaaatgagcacaCTAACTTGGCCTTTCCCTAAATTTCTGGTTAAACAAACTCACTTGTACCCAAAGCCATACATGCACAaagttaattcattttattcatgtgtATTTTCCTTTTCGCGGTTTGCTTGGTGCAACTCTTCGGAAGTAGTTGTAATCTGTTGTGATGGCATTTTGGGTAATCAGGGGTAGGCCAACAGAGGGCAGTGCTCTGtctgtattttcacatttttttttcgaaataatatatttttttttgttcttaagTGACATTTAATGCAGTGGTAAATTCTTTGAAAGGCAGTAGAGATGTGGAAGGTGCCTGGAAAACTGGAAGGTCTGTGGAACTAATTAAAACATACTGGAGGAGAAGTTCATAATGGCTATTGTTGGCAATGCCTTAGGGTTTAATTAAAGAGACTCCTGTCTTATGATTTGGGATATTGCATTTGTTTTAAAGCCCTTTAGCAAGACTGAACAAATGAAATCCAAAATGTGGACAATAAGGTCAGTTAACATGTTTTATGATGAGGAAATTGTCAGCCTTCATAGAGGAAGAAGAATTGACTGAACATGAGGGGGGACAATTTTGCAGCTGTATTGGAACAAAGCAATTATATTGgttttttcaattttcagaTGTTTTCTTGACCTATCGTGCTGATTCTAGTATATTTACTCATTAGTATAATGCATGAATTATGTTTTGTAGCATCTTCCTCATAAGCACTCACTCTTATTGGTGGCAGCAGGACATGGTTAATCCCCTTAAGGAGACGCATGAGATGCAGCATCATTTAAGGACTCAAGATTGAAGTCTTTCAGGGCAATTCTGAAcctccccctctttctctctctccaaagCTTCACTGACTTTGGCATTGGATCTAAATAAATGTGACCCCAGGGGGACCGTGGGAGTGTCCTACCATGAGTGATGGAGCAGCATTCAGCTTTCAGGCTGTTTACACTAGTGCTGATGATATTCTTCTCCCTCATTTGTGCCACCTTCCATTCACCTTGCTTCATGCTGATGGCTCGATTCATCAATATAAGAGACTTTTATTTACCCTCGCCAGActgtacaggaaaaaaaatgcgcTTGTAAGTGAGACGCTGCCGTGAGCCTGGCCCCTCACCACTGACATCTGGGAGGGTTTTCCTGCATTCTGTCTATATACTTTGCTTCAGCttgtccatttcttttttttctctggaggTCTTAGAAGAAAATTACACCATACAAAAAGCATGCAAGCTGCCTGTAACCCAAACATAAAACAACACTCAGGATATGCATTGAAACATCAGTTCAAGACTTGTTTGGAAGTTATGGTAGCTGCTAAATTTTTCTCAATCCTCCTTTGCAGGGCCCATTTCCATCAGGAGtcctcacacagtgaaatggATTTGGCTCTGTTCATAATTTTTAAGACACTGGTTTATTTAGCAGTCTTAAGCAGATGGGAGTGCAGCTATCAGGACATATTTTCCCCCAGGAATGGTCCTGTCTCTAAATTGAAGCCCATGAAGGCCAATTTCTCCCAAAGGACAAATTACAGTTTTAAGATGtgtctgtgcacacacacaggtgggGGAGTATATGTTGGTTTTGAGAATTGGGCAAGTGGGATCAAATCTGCTCTGTGAGTTCCTTAGTAGCACGAGACAGCTGACATGAGGCAAGCAGCTGACCAGCTTTCTTAGTATCACCATTATCCCCAAACAATTGCTCGTCATCATGTACATTACTGAAGGACAGGTTGATTTGTTTagaactgaaatatatatagTGTTGCCTCTTTAGACACCTCCAGGACATTTAGGATTGTTGGTGCAGATTTGTTTCATATTAGCGATAAGAGATCTGTTTAGGTGCACATCCCTGCTGCAGCTTTTTCAGTATAGAAGAATATAGCTGTAGACATTACAAAAGTTTTCTTAAAATGTATTCCTGAATTATAGATTTCATACAATTATATGAACACATGCTTAAACTACATTTATGCTtagtttccattaaaacaacTAGCAAATTTTTGTGGATTTGTGCACATTCAGCACTGGTGAGGTTGGGCACAGGCCTTCAAGTGAGaagccctgttttttttctgtcccatTAAAATAAAGGCTGCATAGAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61003 lncRNA downstream 160069 23508529 ~ 23508739 (-) True G51600
TU60987 lncRNA downstream 186454 23482123 ~ 23482354 (-) True G51584
TU60984 lncRNA downstream 194717 23472299 ~ 23474091 (-) True G51581
TU60983 lncRNA downstream 196589 23471667 ~ 23472219 (-) True G51580
TU60982 lncRNA downstream 198109 23466946 ~ 23470699 (-) True G51579
XR_004577814.1 lncRNA upstream 14579 23686729 ~ 23687499 (-) True LOC117596832
TU61160 lncRNA upstream 15464 23687614 ~ 23692863 (-) True LOC113544646
XR_004577813.1 lncRNA upstream 15499 23687649 ~ 23715940 (-) False LOC113544646
XR_004577812.1 lncRNA upstream 15499 23687649 ~ 23704127 (-) False LOC113544646
TU61208 lncRNA upstream 52728 23724878 ~ 23725088 (-) True G51781
XM_034303119.1 mRNA downstream 619684 23032198 ~ 23049124 (-) True phf10
XM_026937353.2 mRNA downstream 691165 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 691165 22964720 ~ 22977643 (-) True fam120b
XM_026937357.2 mRNA downstream 733947 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 745068 22913819 ~ 22923740 (-) True apmap
XM_026941612.2 mRNA upstream 269 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA upstream 269 23672419 ~ 23679731 (-) False c1d
XM_026942047.2 mRNA upstream 55002 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 55002 23727152 ~ 23750761 (-) True kifc1
XM_034303048.1 mRNA upstream 165789 23837939 ~ 23840860 (-) True mgme1
TU60979 other downstream 214591 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 880025 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 880025 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 1567425 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1718619 21949855 ~ 21950189 (-) True G50837
XR_004577819.1 other upstream 345114 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 780969 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 799553 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1010096 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 2237868 25910018 ~ 25910119 (-) True LOC113542183

Expression Profile