Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU61160 |
| length | 848 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC113544646 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 23687614 ~ 23715940 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577814.1 | lncRNA | downstream | 115 | 23686729 ~ 23687499 (-) | True | LOC117596832 |
| XR_004577532.1 | lncRNA | downstream | 15464 | 23668808 ~ 23672150 (-) | True | LOC113537953 |
| TU61156 | lncRNA | downstream | 17608 | 23668823 ~ 23670006 (-) | False | LOC113537953 |
| TU61003 | lncRNA | downstream | 178875 | 23508529 ~ 23508739 (-) | True | G51600 |
| TU60987 | lncRNA | downstream | 205260 | 23482123 ~ 23482354 (-) | True | G51584 |
| TU61208 | lncRNA | upstream | 32015 | 23724878 ~ 23725088 (-) | True | G51781 |
| TU61335 | lncRNA | upstream | 189164 | 23882027 ~ 23882335 (-) | True | G51876 |
| TU61346 | lncRNA | upstream | 251988 | 23944851 ~ 23946345 (-) | True | G51887 |
| TU61365 | lncRNA | upstream | 312525 | 24005388 ~ 24005685 (-) | True | G51903 |
| TU61381 | lncRNA | upstream | 415488 | 24108351 ~ 24129851 (-) | False | LOC113545393 |
| XM_026941612.2 | mRNA | downstream | 7633 | 23672419 ~ 23679981 (-) | True | c1d |
| XM_034302271.1 | mRNA | downstream | 7883 | 23672419 ~ 23679731 (-) | False | c1d |
| XM_034303119.1 | mRNA | downstream | 638490 | 23032198 ~ 23049124 (-) | True | phf10 |
| XM_026937353.2 | mRNA | downstream | 709971 | 22964720 ~ 22977643 (-) | False | fam120b |
| XM_026937352.2 | mRNA | downstream | 709971 | 22964720 ~ 22977643 (-) | True | fam120b |
| XM_026942047.2 | mRNA | upstream | 34289 | 23727152 ~ 23750761 (-) | False | kifc1 |
| XM_026942038.2 | mRNA | upstream | 34289 | 23727152 ~ 23750761 (-) | True | kifc1 |
| XM_034303048.1 | mRNA | upstream | 145076 | 23837939 ~ 23840860 (-) | True | mgme1 |
| XM_026936298.2 | mRNA | upstream | 145076 | 23837939 ~ 23840680 (-) | False | mgme1 |
| XM_026936389.2 | mRNA | upstream | 169856 | 23862719 ~ 23867530 (-) | True | mrpl14 |
| TU60979 | other | downstream | 233397 | 23447908 ~ 23454217 (-) | True | G51576 |
| XR_003404067.2 | other | downstream | 898831 | 22774355 ~ 22788783 (-) | False | znf318 |
| XR_003404066.2 | other | downstream | 898831 | 22774355 ~ 22788783 (-) | False | znf318 |
| TU60345 | other | downstream | 1586231 | 22035285 ~ 22101383 (-) | False | LOC113540944 |
| TU60082 | other | downstream | 1737425 | 21949855 ~ 21950189 (-) | True | G50837 |
| XR_004577819.1 | other | upstream | 324401 | 24017264 ~ 24040100 (-) | False | mlh1 |
| XR_003404244.2 | other | upstream | 760256 | 24453119 ~ 24651847 (-) | False | lyst |
| XR_004577838.1 | other | upstream | 778840 | 24471703 ~ 24651847 (-) | False | lyst |
| XR_004577835.1 | other | upstream | 989383 | 24682246 ~ 24735887 (-) | False | herc4 |
| XR_003404274.1 | other | upstream | 2217155 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
