RNA id: TU61189



Basic Information


Item Value
RNA id TU61189
length 202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G51772
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23724451 ~ 23724652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ggacaattgactgataagcagtttcatggtcAGCTGTGgtctgtttcctccttatttcatgataaattaaggagataaaaggtctggagctgattccaagtgttgaacttgcatttggtagctgttcatgggaactctcactattgtagaccaaagaggtgttgatgcaagtgaaggaggccatcatcaggctgaaaaacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61184 lncRNA upstream 4236 23720012 ~ 23720215 (+) True G51767
XR_003404512.2 lncRNA upstream 73324 23640352 ~ 23651127 (+) False LOC113544527
XR_004577877.1 lncRNA upstream 73324 23648549 ~ 23651127 (+) True LOC113544527
TU61111 lncRNA upstream 107612 23612605 ~ 23616839 (+) True LOC117596653
TU61216 lncRNA downstream 43725 23768377 ~ 23840559 (+) True G51785
TU61262 lncRNA downstream 157375 23882027 ~ 23882326 (+) True G51825
TU61279 lncRNA downstream 248915 23973567 ~ 23988614 (+) True G51836
TU61283 lncRNA downstream 288866 24013518 ~ 24013718 (+) True G51840
XR_003404001.2 lncRNA downstream 330502 24055154 ~ 24057898 (+) False LOC113540163
XM_026939527.2 mRNA upstream 273460 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 448135 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 448811 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 623317 23071308 ~ 23101134 (+) True spred2b
XM_026941717.2 mRNA upstream 654807 23052228 ~ 23069644 (+) True actr2b
XM_034303047.1 mRNA downstream 80285 23804937 ~ 23834851 (+) True slc29a3
XM_034302983.1 mRNA downstream 143499 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA downstream 144992 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA downstream 160824 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 160824 23885476 ~ 23999400 (+) False lrrfip2
TU61166 other upstream 27157 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 268902 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 609412 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 937946 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1700640 22021407 ~ 22023811 (+) True wu:fj16a03
TU61214 other downstream 69028 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 330589 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3261326 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3473257 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3473257 27197909 ~ 27206395 (+) False znf451

Expression Profile