RNA id: TU61216


Basic Information

Item Value
RNA id TU61216
length 1729
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G51785
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23768377 ~ 23840559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacaaaaaacatgtagctcATGCAAATATGGATCGATATACCTGGTAGTTGTAGTTTTTGTCACTGTTTAAGGCTCCAATGTAGGCGGCCACCTGCAAGGGGTTGTCATATGTGTTGTAAAGGAAAGGTTTTGGCTTCTCTGATGTCTTCCACTCTATGACACACAGTGAATtcctgtatattaaaaaaaaaaaaaggacagttaGTTGTTTACGGCAAAAGCTAAAACGTCAGCAAACGTGCTCTTGGTTTTATGAGATGTACATACTTGGTTACATAATACAAAATTCCAGTATTATTAATGTTACTACCAACCAATTTCTTTAGTAGAATTACTGAAATTTGTgttcaataaaacattttttgcttGGCAATAAACATgagtcagaaaaaaacattggtTAAATACCCCCAGGCAGTCCAGTCTAATGAGCAATAGCTCACCTCTTAACCAGTGACATttgttacagttttaaaaatgctggACTGAAACAACTGATTCTCACTTGTACATGGCAACACAATCGACAATGCCCAGGTACTGTAGAGGCTGATGCTGCACAACACTCTCAATGGCTTTCACTCCTGTAATGTCCTCCAACACGTGACTGATACTTTGTAAATACCCAGACACGTTTTCAAGACACACTCCATCTTCAATTAGGGTTTTTTCTCCAGTTAAAATTCCTTCAACAGCTACATGCAACAGTTTCCCCTGTGTGAAAAGATCTAAAACCAAACACATGATGACAGGTCAATTACTTTCCATTTGGAAGGTTCGACAAGAGGCACACACTGGTTTCCATCCAAGTGTTTCGCAAACCTGAAGCAAAGAGACGAAAAAAGGTAATAACTGTGTTTCCATGAGTTAACGTCAGGCAAATATTCTCTATTAGCAACAATCAATGTTAATAAAAGAGCGCCTTCCAAACCTAACTtccaaacatttaaataatttctggTTTCACTTAGGTTTTCTTGGGCACAAAATAAAATTGCGTAATAAAATAGGTGGATGGACACCACGGGGTGGAACTTGGGCCTACTGTTGCTGTATTCTTTGAAGCCTTCCACGCCAAGCTCAGCgatcttctttttcttccatcTCTCCAAATAAAAGGCTTGCTGGGGTGACATTGTcttttgaagtatttttgttACACTTGGTATAGATGCGTGATCTGAACCTCTTTGCAAGCTTATCCGAGTCATGCTTCCCTCCACGTTCTCTGCGTCAAGGACACGTTTTGCGTCGTTTAACAGAGGCCACGGGTTTTTAAGCGCTCTGCACACCTGGGGCTTGGATTTTACGATAGATCCGTAAAGCCACTGATCTTCGTTTTCAATACTTTCTGGAGTCTGAGAGCTGATTCTCGTAGACACGACCGCTTTCACTAGTGCTGAATAGTGTTCAGAGTCCACATCGCCGTACTGGCTGCTCTTCTTGCGCGCCCGCAAACAAGGGAAGGACGAAAACATAGCCATACGTGAGCACGAGCAGCCAGAGAAGCGTCCAGAGAGCACAGCGCTCATACAATACGACTGCAGCCACAGCCTATAAACCCGCATTGTGGCTCCTGTTTTGAGCTGAATGCTACATCCACATACACCTCTCGCAAACTCCAGCTTTGTGTGCAACCCAACGAGCCCATTAAATATTTCACGAATCTAACAGACTTTCACAGCTCATAAATTTTGTACCGTACTACTTTGAATTTGAGTCCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61189 lncRNA upstream 43725 23724451 ~ 23724652 (+) True G51772
TU61184 lncRNA upstream 48162 23720012 ~ 23720215 (+) True G51767
XR_003404512.2 lncRNA upstream 117250 23640352 ~ 23651127 (+) False LOC113544527
XR_004577877.1 lncRNA upstream 117250 23648549 ~ 23651127 (+) True LOC113544527
XR_004577698.1 lncRNA upstream 154441 23612642 ~ 23613936 (+) False LOC117596653
TU61262 lncRNA downstream 41468 23882027 ~ 23882326 (+) True G51825
TU61279 lncRNA downstream 133008 23973567 ~ 23988614 (+) True G51836
TU61283 lncRNA downstream 172959 24013518 ~ 24013718 (+) True G51840
XR_003404001.2 lncRNA downstream 214595 24055154 ~ 24057898 (+) False LOC113540163
TU61305 lncRNA downstream 214661 24055220 ~ 24057887 (+) False LOC113540163
XM_026939527.2 mRNA upstream 317386 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 492061 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 492737 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 667243 23071308 ~ 23101134 (+) True spred2b
XM_026941717.2 mRNA upstream 698733 23052228 ~ 23069644 (+) True actr2b
XM_034302983.1 mRNA downstream 27592 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA downstream 29085 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA downstream 44917 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 44917 23885476 ~ 23999400 (+) False lrrfip2
XM_026936136.2 mRNA downstream 44917 23885476 ~ 23999400 (+) False lrrfip2
TU61166 other upstream 71083 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 312828 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 653338 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 981872 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1744566 22021407 ~ 22023811 (+) True wu:fj16a03
TU61306 other downstream 214682 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3145419 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3357350 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3357350 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 3357350 27197909 ~ 27206370 (+) True znf451

Expression Profile