RNA id: TU61262


Basic Information

Item Value
RNA id TU61262
length 300
lncRNA type intronic
GC content 0.35
exon number 1
gene id G51825
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23882027 ~ 23882326 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaagatggatctcaaaatcatacggTCATtgtggaaagggttcaaatacacaaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcgggcagtttaactgttcaggacaaacaagggactcttgaacaactatcagtaaacaaaaaaacacagctgtggatcattcaggtaacaacacagtattaagaatcaagggtatgtaaacttttgaacggggtcatttttataaattcaactattattttctcttgtggactatatgtaaacatctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61216 lncRNA upstream 41468 23768377 ~ 23840559 (+) True G51785
TU61189 lncRNA upstream 157375 23724451 ~ 23724652 (+) True G51772
TU61184 lncRNA upstream 161812 23720012 ~ 23720215 (+) True G51767
XR_003404512.2 lncRNA upstream 230900 23640352 ~ 23651127 (+) False LOC113544527
XR_004577877.1 lncRNA upstream 230900 23648549 ~ 23651127 (+) True LOC113544527
TU61279 lncRNA downstream 91241 23973567 ~ 23988614 (+) True G51836
TU61283 lncRNA downstream 131192 24013518 ~ 24013718 (+) True G51840
XR_003404001.2 lncRNA downstream 172828 24055154 ~ 24057898 (+) False LOC113540163
TU61305 lncRNA downstream 172894 24055220 ~ 24057887 (+) False LOC113540163
TU61303 lncRNA downstream 172915 24055241 ~ 24057887 (+) False LOC113540163
XM_034303047.1 mRNA upstream 47176 23804937 ~ 23834851 (+) True slc29a3
XM_026939527.2 mRNA upstream 431036 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_026935614.2 mRNA upstream 605711 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA upstream 606387 23220125 ~ 23275640 (+) False meis1b
XM_026941706.2 mRNA upstream 780893 23071308 ~ 23101134 (+) True spred2b
XM_026936128.2 mRNA downstream 3150 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA downstream 3150 23885476 ~ 23999400 (+) False lrrfip2
XM_026936136.2 mRNA downstream 3150 23885476 ~ 23999400 (+) False lrrfip2
XM_026936162.2 mRNA downstream 3151 23885477 ~ 23999400 (+) False lrrfip2
XM_026936176.2 mRNA downstream 3151 23885477 ~ 23999400 (+) False lrrfip2
TU61214 other upstream 76532 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 184733 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 426478 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 766988 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 1095522 22784328 ~ 22786505 (+) True G51271
TU61306 other downstream 172915 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 3103652 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3315583 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3315583 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 3315583 27197909 ~ 27206370 (+) True znf451

Expression Profile