RNA id: TU61283


Basic Information

Item Value
RNA id TU61283
length 201
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G51840
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24013518 ~ 24013718 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAATATTAGGATGGATTTCTTTTCGTCAAAGGCCTATAGGCGTAAATGGCAGCATATGTACgcaacacacatcacattatAGCAACAAATTTGTCCAAGAGACATGTTTCACTGCACTGTTCACTACTAAGTGCATCTGTTAAAGTGAGGTATGAACAAACCAGCTGACACGGTCTACAATGCTACTTTAAACAAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61279 lncRNA upstream 24904 23973567 ~ 23988614 (+) True G51836
TU61262 lncRNA upstream 131192 23882027 ~ 23882326 (+) True G51825
TU61216 lncRNA upstream 172959 23768377 ~ 23840559 (+) True G51785
TU61189 lncRNA upstream 288866 23724451 ~ 23724652 (+) True G51772
TU61184 lncRNA upstream 293303 23720012 ~ 23720215 (+) True G51767
XR_003404001.2 lncRNA downstream 41436 24055154 ~ 24057898 (+) False LOC113540163
TU61305 lncRNA downstream 41502 24055220 ~ 24057887 (+) False LOC113540163
TU61303 lncRNA downstream 41523 24055241 ~ 24057887 (+) False LOC113540163
TU61304 lncRNA downstream 41523 24055241 ~ 24057887 (+) False LOC113540163
TU61408 lncRNA downstream 123193 24136911 ~ 24137372 (+) True G51944
XM_034302983.1 mRNA upstream 14118 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA upstream 14118 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA upstream 14118 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA upstream 14118 23885476 ~ 23999400 (+) False lrrfip2
XM_026936136.2 mRNA upstream 14118 23885476 ~ 23999400 (+) False lrrfip2
XM_034302049.1 mRNA downstream 119905 24133623 ~ 24136847 (+) True LOC117596572
XM_026939158.2 mRNA downstream 302985 24316703 ~ 24345368 (+) True ggps1
XM_026939154.2 mRNA downstream 336466 24350184 ~ 24402454 (+) False b3galnt2
XM_026939153.2 mRNA downstream 336470 24350188 ~ 24402454 (+) False b3galnt2
XM_034302678.1 mRNA downstream 337624 24351342 ~ 24402454 (+) False b3galnt2
TU61214 other upstream 208023 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 316224 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 557969 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 898479 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 1227013 22784328 ~ 22786505 (+) True G51271
TU61306 other downstream 41523 24055241 ~ 24057887 (+) True LOC113540163
TU63018 other downstream 2972260 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3184191 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3184191 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 3184191 27197909 ~ 27206370 (+) True znf451

Expression Profile