RNA id: TU61306


Basic Information

Item Value
RNA id TU61306
length 1000
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC113540163
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24055154 ~ 24057898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACGACTGCTGCTCAGTGCGTTTTCATTGTCGTCGTCCACTTAAGCTTCAATGTTtggcagagagaaaagaagcCCAGCCTGCCCGTCGCTGATCGTGACAGCAGTCAGTGtgagaagagggagagaatgagggagagtCAAGCTGCCAGCAGCGGCAAAAAGCAGTGCAGCTCCCACCCCTTTTAACCAGGTGGGCGAAATACCAGAGCATCTAggcttttctttaaaattttcacCCATGAAATATACACGgaattttgtaacatttatttgtattgGATGGACAAACCTGGATGGCTCAGGTTCAGATGAAGACAGCCAGAGTGTTCGTGAAGGGGATAATGATCCATCATCATCAGAACCAGAGTCACCAAGCAGTTCTTCTGGCCCAATAGAACCTGATGACATTTCCCAGTATGGAGCAGAGGGTTCTGTCCAGTCATCAAAGAATTATTCTGGTCCCCTAGGACCTGATGgCCAAACCCAAGTTACCCAGCATGCCAGTCTTCTGAAGAAGACATAATCAAACCTCGTACTGCTCCCACCAGCTCCACCGGCACCACCAACTTCTATACTCTTCTATACTTGACTCGAGAAGGCTGACAGTTACTCTTAAGCATTGGTTTTAAGCTTTCATGTATCACTGTAACAAATTTGATATTATTGCATAAGTTGTTAAAGTAAACAAATTGTtacaaaaatgcaataaaatacacAACTGTAAATGTACTGTGATTAATCAGCGCTCATATGTTTGTtacatttttccaaaagattatactctgtctctctctctctctctctctctctctctctctctctctctctctctaatgtttttttaataaactttgtTGTAGATCCAGGTTAGTGGGGCCCCTGAGGGGATTGATTCAGACTTATTGTGTTCTAATGTGGTtctatatttgtttttgttttttttttttttgtttttaataaaatatggtTATGTGTTTCTATTTAATAAAAAGTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61283 lncRNA upstream 41523 24013518 ~ 24013718 (+) True G51840
TU61279 lncRNA upstream 66627 23973567 ~ 23988614 (+) True G51836
TU61262 lncRNA upstream 172915 23882027 ~ 23882326 (+) True G51825
TU61216 lncRNA upstream 214682 23768377 ~ 23840559 (+) True G51785
TU61189 lncRNA upstream 330589 23724451 ~ 23724652 (+) True G51772
TU61408 lncRNA downstream 79024 24136911 ~ 24137372 (+) True G51944
TU61409 lncRNA downstream 102863 24160750 ~ 24167875 (+) True G51945
TU61411 lncRNA downstream 124694 24182581 ~ 24182780 (+) True G51947
TU61422 lncRNA downstream 139134 24197021 ~ 24210304 (+) True G51958
TU61421 lncRNA downstream 156953 24214840 ~ 24215585 (+) True G51957
XM_034302983.1 mRNA upstream 55841 23868151 ~ 23999400 (+) False lrrfip2
XM_034302984.1 mRNA upstream 55841 23869644 ~ 23999400 (+) False lrrfip2
XM_026936128.2 mRNA upstream 55841 23885476 ~ 23999400 (+) True lrrfip2
XM_026936154.2 mRNA upstream 55841 23885476 ~ 23999400 (+) False lrrfip2
XM_026936136.2 mRNA upstream 55841 23885476 ~ 23999400 (+) False lrrfip2
XM_034302049.1 mRNA downstream 75736 24133623 ~ 24136847 (+) True LOC117596572
XM_026939158.2 mRNA downstream 258816 24316703 ~ 24345368 (+) True ggps1
XM_026939154.2 mRNA downstream 292297 24350184 ~ 24402454 (+) False b3galnt2
XM_026939153.2 mRNA downstream 292301 24350188 ~ 24402454 (+) False b3galnt2
XM_034302678.1 mRNA downstream 293455 24351342 ~ 24402454 (+) False b3galnt2
TU61214 other upstream 249746 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 357947 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 599692 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 940202 23114185 ~ 23115039 (+) True LOC113545030
TU60615 other upstream 1268736 22784328 ~ 22786505 (+) True G51271
TU63018 other downstream 2928091 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 3140022 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 3140022 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 3140022 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 4389490 28447377 ~ 28448311 (+) True G53692

Expression Profile