RNA id: TU61422


Basic Information

Item Value
RNA id TU61422
length 2355
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G51958
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24197021 ~ 24210304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGATTTCTGCTCACTCTCCTGCTGACTGCTGCTGCTTAAACTCAGGCTACAGCTGCTGTTGCTGGACAGGTTTGCATCAAAAGCTTTGGAGAGGGATTCTGACTGCTCTTCCTGAGGCAGTGTGTGAAACTCACAGCTCACAATATCCATCTCCACTGTACTAGTGTCAGACTCGCTGCGCCCACCAACACACTCTTCTGTCAAAGGCCCAGCTGGTGAGGATGTGGCTGGAGAGCAAGATGCCAGGACAGAACTCTGAGGGGGTGGTGAGGATGAGTGCATCTCACGCAAGACCTCAGCAGACTCTGGCGTGGTGGGTGGTGTGTTGAGGATGGAGTTGCTTCCACTGCTGGGATACTCCTGGTTCTTTTCTTGGCTCTCCTGTGGCTCCTCACGTGTTTCACTTTTCTGCTCAGGCTCGGGATCCAGGTCACCCAGTCCAGGTACCACTGGAGGAGGAGAATTTGCAGCTTCAGTGTCTGAATCAGAAAACAACTCTTTCAGGGTTTTCTTAGGCCACTGGGCCTGAATACTGGACCATACATCCTTATGGCCTTTGGTACGGCAGCCAGGTGTCCTGTCTTCCATTCCAGATGTCATTTTAGCTCGCTTGTCAGGGATTTCCCAGAATGCCGAAGACCGACCACCCTTGGCCTTTTCCTTCAGGCCGTTGTACTTCTTTGAAGGGGCACCCTTGGCTTTGTGGTGCATTAGAAGCTCTTCTTTGGCCTGGGATTCCATAAGAAGACCACCCTCATCCTCAGAACTGCTGCTGGACTGCATGCCTCCATCCAGAGTACCAATGTTTCTTTCTTCCAGCTTCTTAAGTGAACTCTCTGACAGCCAATCGCTCAACTTGCTACCCCTGGTTTTGCCTTTGCGTTGGGTTTTATGTGTACGCTCAGTAGTTCCATCAGCTTTTCTTCTCCTGGTGCTCAAGGCCTCCCCCTCTGTTACtaactgtttatttgtttctggACTGTACTGGCTGGATGATACCTCTGTGGTGCCCATACTCACTGAAGCTTTGTGTCCCTCACTGGATGGCTCACTTTCCCATTGTGGGGCTTTATAAAGGCTTTCTGGAGAAGCTCTTCTCTGAAGGCTTAGCTGGCCTGCTGGACAATCATTATTATGGTCACCTTGTTCATCCTGCTCATGTTTGCTGTGATCTATGGAGCTCTCAggtgctaacacacacacacacacacacacacacgcacgcacacaagcacacattcCTAGTTGTTCCTCACCCTAGAGCCAACGGGTTAGAAGGTGTTAGGCAGGACCCTGGTTTCAGAGCtttctaaatgaaataaaaagctgGTCGATTGGAAGATCTTCTTATGGTGCTTAAACTGGAATTTTCAATGTTTCCACATGCGCATGAAACCTGAGAGAGTTACACCAAAAAAGGGAACTAAAGGGGGACACAACTACACAAGCAGCTTCAAAACAAACATCATCAATTTCTTCACTTAAATATCAAGTGGTGCAATATCAGCACCAGTAAAATATAACAAAGAGCTAACATGCCCAATATAAATCCTCAATACATGCCTGTATACATGCCTAAGACAAATATGGACACTCAAGTCTGCTGCATTATATCagacttttcaaaacaaaaagaggTAAGTGTGTGAACACACTGGCTGAAGATAACAAACCAACATATGGAAGTTTATATATGTTAATGTAGTGAGGCAGTTGAGAGGAGAAATCACTGCAAAACAGAGAAAGGTAACATAACATCTGACAGAAGGTCCACTGCCTTTTGAAAAATAAGAGCAAGGCAAGAGACAAAGAAGTTTCAAAAGACATACTATATAAGCTGTTCAACCCAAGATGTTGTCAATTCCTTGTTTCTCTGAGAAAGTTCAGGGGATGGTGGATTGTTTTGTATTacaaagtctccatacatagggggaATTAACTGTTTTTAAGCGatatgtaactttatttacaaaaaatccTCTACATTTGTAATTGCCATTcctttgtaaacacacatggagtcatctctcccaactttggctcccagtttggcagaagtgttgtgtgtgatgtgcttgccatgtttcctgttaaagtccatcgcaaccttacatccagccatgagaatgatttcaatatttcaatgaTTTCTCTTTTATCAATGGCATTCTTAAAccctatctgaaaaaaaaaaatattatataaactaagtattttggaagacattttgctaaaaagtgttaatttcatttatgtgtggagacttttgggacaccctgtagtttggATTAGTTTTAACAGTCTTAAAGAGAAATATAGCTGCGAGAAGCAACTATCGGGGTTCAGGCGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61411 lncRNA upstream 14241 24182581 ~ 24182780 (+) True G51947
TU61409 lncRNA upstream 29146 24160750 ~ 24167875 (+) True G51945
TU61408 lncRNA upstream 59649 24136911 ~ 24137372 (+) True G51944
TU61305 lncRNA upstream 139134 24055220 ~ 24057887 (+) False LOC113540163
TU61421 lncRNA downstream 4536 24214840 ~ 24215585 (+) True G51957
TU61457 lncRNA downstream 137256 24347560 ~ 24347812 (+) True G51978
TU61444 lncRNA downstream 140499 24350803 ~ 24372472 (+) False b3galnt2
TU61440 lncRNA downstream 140991 24351295 ~ 24372472 (+) False b3galnt2
TU61441 lncRNA downstream 140991 24351295 ~ 24372472 (+) False b3galnt2
XM_034302049.1 mRNA upstream 60174 24133623 ~ 24136847 (+) True LOC117596572
XM_026936195.2 mRNA upstream 197621 23885487 ~ 23999400 (+) False lrrfip2
XM_026939158.2 mRNA downstream 106399 24316703 ~ 24345368 (+) True ggps1
XM_026939154.2 mRNA downstream 139880 24350184 ~ 24402454 (+) False b3galnt2
XM_026939153.2 mRNA downstream 139884 24350188 ~ 24402454 (+) False b3galnt2
XM_034302678.1 mRNA downstream 141038 24351342 ~ 24402454 (+) False b3galnt2
XM_034302682.1 mRNA downstream 141038 24351342 ~ 24402454 (+) False b3galnt2
TU61306 other upstream 139134 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 391526 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 499727 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 741472 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 1081982 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 2775674 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 2987605 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 2987605 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 2987605 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 4237073 28447377 ~ 28448311 (+) True G53692

Expression Profile