RNA id: TU61456


Basic Information

Item Value
RNA id TU61456
length 3333
lncRNA type intronic
GC content 0.43
exon number 2
gene id G51977
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24358660 ~ 24362069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacccgtcatgcatagtgcctactgtacaagcctctggaggcagtgttatgatctggggttgcatcaactggtcaggtctaggctcagcctcattgtgcggcaataaaattaagtcagctgagcacctgaatgtactgaatgaccaggttatcccgtcaatggactttttcttccctgacggcacaggcatattccaggatgaaaatgctaagattcgtcaggcttaacttgtgaaagagtcgttcagggagcatgaggaatcatttctgttctgaccttaaccccactgaaagtctttgggatgtgctggagaagactttatggagtggttagactctcctgtcctcaatgcaagatctcggccaaaaattaatgcaactctgggtgggaataaatgttgtgaagttgcataaggttgttgaaacaatgccaggatgAATGCatgccgtaatcaaagctaaatgcggtgcaacaaagtattagattgtgtgacttttctttggccaggcagtgtatatatgtatgtatgtgtatgtgtgtgtttatatatatacacacacaccgatcagccataacattatgaccacctgcctaatattgtgttggtcccctttttgctgccaaaacagctgtgaccctttgaggcatggactccactagatccctgaaggtgtgctgtagtATCTGGCAAAAAgtcgttaacagcagatcctttaagtcctgtaagttgcgaggtggggcttgatggccagcacaccccacagatgttcaattatccacatgaatgccaggacccaaagtttcccagcagaacattgcccagagcatcacacttcctccgccagcttgcgttcttcccatagtgcatgttggtgccatctcttccccacgAAAACAATGCACACagacccggccttccacatgatgtaaaagaaaatgtgatttatcagaccaggccaccttcttccattgctccatggtccagttctgatgctcatctgcccattgtaggcacttttgtcAGTGGACAGGGGTCGGCATGGGCACTCTGAGCGGTCTGCGGTTACACAgttccatacgcagcaagctgcgatgcactgtgtgttctgacacctttctatcatagccagctttaaattttcagcaatttgtgctacaatagttcttctgtgggatcagaccagatggactagccttcactccccacgcgcatcagtgagccttgggcgcccatgaccctgccgctagttcaccagttgtccttccttggaccatttttgttaggtactaaccactgcatacggGAACACCCCAAAAGgcctgccattttaaagatgctctgacccagtcatctagccatcacaatttggccattgtcaaagtctctctaatccttacgcttgcccatttttcctgtttccaacacatcaacttcgagaaccaactggtcacttgctgcctaatatatctcaacccttgacagatGCTATTGTAAcaatcaatatcaatattattcacttcacctgtcagtggccataatgttatggctgatcggtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtatatatatatttgctaaAACAtatatggtttcatttttttttatatcactggaacctgccattttaacaggggtgtgtagactttttatatccattgtacaaACAAATTAGCAGCTATCCATATTATTTTTGTCAGCTTTTTAATGCAATTACAATACCGTTTCCTTGCTGCTGAGCACTCGGCTCCATTCCATGTCAGAGGCAGGTTCACCTTTAATGGAATGGGGCGTGGCTAACATTCACAGCACCTCCTACTCCAAAATTACTTGACCAACAGAGATTTAAGGTGAACGCCTTCTTCTAAATGAAGAAGTCTTTGTGTCGTATACAggcaggtccataagtatttggacagtgacacaatttttgtaattttgcctctgtacaccccacagtggatttgaaatgaaacaatcattgtgtggcctgtttccgtattatttcatgacaaattaaggagataaaagttctggagttgattcccagtgttgaatttgcatttggtagctgttcatgggaactttcagtatgcggtccaaagaggtgtcgatgcaagtgaaggaggccatcattagggtgaaaaaaacaaaacagacctatcaaagAGATATTACAAACTtcaggagtggccaaatcaacaatttggtacattcttgaCAAGAAGGAAtggcactggcgagctcagcagcACCAAAAAAGCCTGGAAGGCCATGGAAGACAGCTAAAGTGGATgtttgcagaattctttccttattgaagaaaaatcccttcacaacatctagccaagtcaagaacactttggaggaggtaggcgtatcttTGTCAAGGTCTagaatcaagagacgccttcatgaatgtaaatactgatgttttacctcaagatgcaaaccactggtaacactcaaaaACAGAGAGACTATATTaaactttgattaaaaaaaaaatgcaagattcacttgtaccagaatgatgggaagagaagagtatggaaaaggaaaggaagggatcatgatccaaagcataccacatcatatGGCATGGGCATTTATGGCTGCCAGTGATACTGAGTCACTGGTGTTTCTTGATGATGTggctgctgatagaagtagcaggatgaattctgaagtgtatagagctgtattttctgctcagattcagtcaaatgctgcaaaactgataggtactaaccctaaccctactgTGCTTCACAGTACAAATGGATTTTGACCCAAAAAGTACCACAAAAGCAACTCATTTCCATgagttccagacttcaggcagacACTGACTGTGAAGGATTTGCATTTacgtattaaaaataatcctaatatttatgattgttagtttgtccaattacttttgagcctgtgaaaatggagggactggaaaaatggttgtaattcctaaacggttaatgcgatatttttgttaaacccgttgaattaaagctgaaagtctacacttcaatcacatcttgattgcttcattacaaatccactgtggtggtgtaaaGAGGTAATagtatgaaaattgtgtcactgtccaaatacttatggacaatatacacaatacattGTGTacagtacaatgaaattcttttcatataccagcttgttaggaactaggggtcagagcacagggccATTATACAGCACCCTtggagcagatagggttaagggccttgctcaagggcccagcagtggcagcttgaccCCTGATCTTCTGCttagtaacccagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61457 lncRNA upstream 10848 24347560 ~ 24347812 (+) True G51978
TU61421 lncRNA upstream 143075 24214840 ~ 24215585 (+) True G51957
TU61422 lncRNA upstream 148356 24197021 ~ 24210304 (+) True G51958
TU61411 lncRNA upstream 175880 24182581 ~ 24182780 (+) True G51947
TU61409 lncRNA upstream 190785 24160750 ~ 24167875 (+) True G51945
TU61459 lncRNA downstream 40639 24402708 ~ 24403344 (+) True G51980
XR_004577836.1 lncRNA downstream 292831 24654900 ~ 24659092 (+) True LOC117596845
TU61661 lncRNA downstream 299392 24661461 ~ 24662405 (+) True G52161
TU61663 lncRNA downstream 327169 24689238 ~ 24696897 (+) True G52163
TU61677 lncRNA downstream 374528 24736597 ~ 24737982 (+) True G52175
XM_026939158.2 mRNA upstream 13292 24316703 ~ 24345368 (+) True ggps1
XM_034302049.1 mRNA upstream 221813 24133623 ~ 24136847 (+) True LOC117596572
XM_026936216.2 mRNA upstream 359260 23885488 ~ 23999400 (+) False lrrfip2
XM_034302681.1 mRNA downstream 6459 24368528 ~ 24402454 (+) False b3galnt2
XM_026939335.2 mRNA downstream 54421 24416490 ~ 24440455 (+) False cacul1
XM_026939336.2 mRNA downstream 54421 24416490 ~ 24440455 (+) False cacul1
XM_026939338.2 mRNA downstream 54450 24416519 ~ 24440455 (+) True cacul1
XM_026939337.2 mRNA downstream 54450 24416519 ~ 24440455 (+) False cacul1
TU61306 other upstream 300773 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 553165 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 661366 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 903111 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 1243621 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 2623909 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 2835840 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 2835840 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 2835840 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 4085308 28447377 ~ 28448311 (+) True G53692

Expression Profile