RNA id: TU61566


Basic Information

Item Value
RNA id TU61566
length 231
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G52076
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24415319 ~ 24416426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagCATTACATATCTAACCGTTTGGCTGGTTTGGCTGGAAAACAGAGTAGGCAAAACAGATTTGAAGTGAAATACCAGAAGCATTTTGATGCTGAACATCAAAATCAACTCCTGCTTCATGCCACTGAGCAACTGACTGTAGTACTGGCTGATtttattgGCGGTTGCCAGACCAGCTTTTGGTGCATTACCGCGACCAACTGAACTGGAGTGTGGAGCATTGATGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61589 lncRNA downstream 22573 24387381 ~ 24392746 (-) True G52097
XR_004577852.1 lncRNA downstream 146180 24260352 ~ 24269139 (-) True LOC117596863
TU61407 lncRNA downstream 278524 24136506 ~ 24136795 (-) True G51943
TU61381 lncRNA downstream 285468 24108351 ~ 24129851 (-) False LOC113545393
TU61365 lncRNA downstream 409634 24005388 ~ 24005685 (-) True G51903
TU61647 lncRNA upstream 132245 24548671 ~ 24605747 (-) True G52147
TU61654 lncRNA upstream 147530 24563956 ~ 24564286 (-) True G52154
TU61657 lncRNA upstream 225670 24642096 ~ 24642916 (-) True G52157
TU61618 lncRNA upstream 233691 24650117 ~ 24651824 (-) False lyst
TU61766 lncRNA upstream 322402 24738828 ~ 24742668 (-) True G52259
XM_026939259.2 mRNA downstream 98891 24191772 ~ 24316428 (-) False arid4b
XM_026939260.2 mRNA downstream 98891 24191772 ~ 24316428 (-) False arid4b
XM_026939256.2 mRNA downstream 98891 24191772 ~ 24316428 (-) False arid4b
XM_026939262.2 mRNA downstream 98892 24190418 ~ 24316427 (-) False arid4b
XM_026939232.2 mRNA upstream 35560 24451986 ~ 24651847 (-) False lyst
XM_026939233.2 mRNA upstream 35560 24451986 ~ 24651847 (-) False lyst
XM_026939235.2 mRNA upstream 35560 24451986 ~ 24651847 (-) False lyst
XM_026939234.2 mRNA upstream 35560 24451986 ~ 24651847 (-) False lyst
XM_026939231.2 mRNA upstream 35560 24451986 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 375219 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 961102 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 1626536 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 1626536 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 2313936 22035285 ~ 22101383 (-) False LOC113540944
XR_003404244.2 other upstream 36693 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 55277 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 265820 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 1493592 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 3121350 27537776 ~ 27541299 (-) False zgc:163080

Expression Profile