RNA id: TU61647



Basic Information


Item Value
RNA id TU61647
length 1921
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G52147
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24548671 ~ 24605747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaagcagagagttAATATCAGTGGATAGTAGTGAGTTATTATCAGTTGATGACACAGCTGATCATGTAATCATTCGTTGCTGCATGGAATGCACAGAGACGCATTCAtgttcacactacaaatgtgatGTATGTCCCAGACCAACTCCGAATGTGGTTCGAATCATCGGATCACAACGTGTCCATAAGACGCATACCATGTAATGAGTGGCGCAGACAGAAATTTCAAATACAGTGCCTCCATTAAAACTCGCCTCCCTTAAAACTCACCTCCCATAAAACTCCTCAGGTTTGTCTGGATTTAAAATGACACTTATACAGATTGTTTcagccagtattttttttattgcagaccaagtatttaactttattattactGAAGGAATAATTACTTTACAgcgtttctttgcatgtgccaaagtcctttgcacagtactttgTATTAGAGTTGTAACCGATTGCATTATTTGGATTGAAAAGACAATGTGCcctaaacaaatatgaatacatatatGAACTGTAGATGAAGTATTTGTGATGAAGTTTGTTCCTAGAAAGATTGCCTGCTTCAGACTTGGTGTGTCCATTGAGATCCTCCagaatgaaacaataaaaagtcACAAGAGTGAGATTTTTACTTAAATTTGTGGGTTTAAAAAACTCTCACTGATGATCGTGGGGAGGGTTggcaggtttcagcaaaattcccaccCTGACTACAACTCAAGAACTGCACTAAAAGACTTGAAATTGGTGCAAAATATTCTGTATAGGAGAAGGTGGATGCATGCTTAAAGGATCCCATTTTGACTCACAGTAGCACTCAGAGTGCATCCAGCTTTAAAGAAGATTTTGATAGCATGtccagtgaagttttctgatcATTCTGGAAGGTAAGAAACctaaaaactaaagtaaatctgataaaatattactaGATGGGTATTACTGTCAactgtaaataacagtttcttgattcaGTCACATcagatagaagatagaaagctttccaaaataaaaataaaaataaatagaaaaaaacttacaataacccagatgcatcatatatcatatacataGTCAATAAATTCATTCTGATttaccccaaataaagatcagctgtttctgtaggattttattaacatctttttatttttattttggcacTAAAGGTGCAGGCCTCTGTTACacaaaaatttcaccttccaggcCAATAACAACCCAAAGCGCAAATGTAAGTCAACAAAGGATTGGCCACCTTTATTATGTTTTTCGTCTGAAAAGTGGTTTACTTTCTGTAGTGATgtacaaacacttttctgtaatatttaatttttcgttggaaaagtaatgtttggaaatgtaagatgtttttgtactgacttaaTAGTGCAGAAgtcaaaataaacatctataacaaaatttgtactaaaaaatagggaTTTATAAGATTTTTGTACATACTTTATGGCCGTACACAGTCATGGTGAAAAGAATGACCAATTCTATGTTCAATTCTAGGACAACAGctattgtgtggtcctcaccaacttatataaacaaaccaacaacctcaggtgacaacaaaaaacacaagttATTTCAATATGTATTAATTtcttcccaaaaagtaaaccaacattcagaaaccaggtgggaagaATAaatacacccttcctacttccacaatcactaagagagtaattagcagccaggtgttactagtgaaatgcacaagattagttaatcatcaagaagtgtgagcttttggcagtttggtgttctggagcacgcAGGTATGTgtcatcatgccaagaagaaaagacatcaaccatgacctcagagatgcaattgttgctgctcatcaatctcggaagggttataaggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61566 lncRNA downstream 132245 24415319 ~ 24416426 (-) True G52076
TU61589 lncRNA downstream 155925 24387381 ~ 24392746 (-) True G52097
XR_004577852.1 lncRNA downstream 279532 24260352 ~ 24269139 (-) True LOC117596863
TU61407 lncRNA downstream 411876 24136506 ~ 24136795 (-) True G51943
TU61381 lncRNA downstream 418820 24108351 ~ 24129851 (-) False LOC113545393
TU61657 lncRNA upstream 36349 24642096 ~ 24642916 (-) True G52157
TU61618 lncRNA upstream 44370 24650117 ~ 24651824 (-) False lyst
TU61766 lncRNA upstream 133081 24738828 ~ 24742668 (-) True G52259
TU61790 lncRNA upstream 181766 24787513 ~ 24787859 (-) True G52282
TU61791 lncRNA upstream 183144 24788891 ~ 24789095 (-) True G52283
XM_026939259.2 mRNA downstream 232243 24191772 ~ 24316428 (-) False arid4b
XM_026939260.2 mRNA downstream 232243 24191772 ~ 24316428 (-) False arid4b
XM_026939256.2 mRNA downstream 232243 24191772 ~ 24316428 (-) False arid4b
XM_026939262.2 mRNA downstream 232244 24190418 ~ 24316427 (-) False arid4b
XM_026939265.2 mRNA upstream 56238 24661985 ~ 24735868 (-) False herc4
XM_034302737.1 mRNA upstream 63403 24669150 ~ 24735877 (-) True herc4
XM_034302738.1 mRNA upstream 71327 24677074 ~ 24735877 (-) False herc4
XM_034302739.1 mRNA upstream 95083 24700830 ~ 24735888 (-) False herc4
XM_026939252.2 mRNA upstream 207227 24812974 ~ 25090822 (-) True LOC113542016
XR_004577819.1 other downstream 508571 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1094454 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 1759888 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 1759888 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 2447288 22035285 ~ 22101383 (-) False LOC113540944
XR_004577835.1 other upstream 76499 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 1304271 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2932029 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3827473 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 4596185 29201932 ~ 29202003 (-) True trnae-cuc_11

Expression Profile