RNA id: TU61681


Basic Information

Item Value
RNA id TU61681
length 233
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G52179
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24753166 ~ 24753398 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGACATCAGCAAAAATCTTAAACAACCGCGCTTTAGTATAATACACGCAGTGTactattttaaattgtataagACCATGTCTAGCACAAATAGAGGagttacactgcaaaaaataaccatctaaatataagaaacaaatgcatGATTTAAGAAGATACAGACTAGAAACAAgtcaaattatctgccagtgcAGTAAGATAATTATACTTGGTAAGATTtcttgaaataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61677 lncRNA upstream 15184 24736597 ~ 24737982 (+) True G52175
TU61663 lncRNA upstream 56269 24689238 ~ 24696897 (+) True G52163
TU61661 lncRNA upstream 90761 24661461 ~ 24662405 (+) True G52161
XR_004577836.1 lncRNA upstream 94074 24654900 ~ 24659092 (+) True LOC117596845
TU61459 lncRNA upstream 349822 24402708 ~ 24403344 (+) True G51980
XR_003404271.2 lncRNA downstream 24214 24777612 ~ 24780540 (+) True LOC113542174
TU61689 lncRNA downstream 27970 24781368 ~ 24781620 (+) True G52187
TU61690 lncRNA downstream 28258 24781656 ~ 24781884 (+) True G52188
TU61692 lncRNA downstream 30672 24784070 ~ 24784294 (+) True G52190
TU61693 lncRNA downstream 31371 24784769 ~ 24784984 (+) True G52191
XM_026939335.2 mRNA upstream 312711 24416490 ~ 24440455 (+) False cacul1
XM_026939336.2 mRNA upstream 312711 24416490 ~ 24440455 (+) False cacul1
XM_026939338.2 mRNA upstream 312711 24416519 ~ 24440455 (+) True cacul1
XM_026939337.2 mRNA upstream 312711 24416519 ~ 24440455 (+) False cacul1
XM_034302681.1 mRNA upstream 350712 24368528 ~ 24402454 (+) False b3galnt2
XM_026939276.2 mRNA downstream 429755 25183153 ~ 25191848 (+) True gpatch11
XM_026939267.2 mRNA downstream 451741 25205139 ~ 25239169 (+) True tsnax
XM_026939268.2 mRNA downstream 451741 25205139 ~ 25239169 (+) False tsnax
XM_026939266.2 mRNA downstream 451741 25205139 ~ 25239169 (+) False tsnax
XM_034301836.1 mRNA downstream 603991 25357389 ~ 25364017 (+) True LOC113541878
TU61306 other upstream 695279 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 947671 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 1055872 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 1297617 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 1638127 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 2232580 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 2444511 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 2444511 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 2444511 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 3693979 28447377 ~ 28448311 (+) True G53692

Expression Profile