RNA id: TU61766


Basic Information

Item Value
RNA id TU61766
length 3841
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G52259
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24738828 ~ 24742668 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTTCaagtcaattcaattttatttgtatagcgcttttaacaatggacattgtcacaaagcagctttacagaaataaacatattcacattaaattaaatcaaaaataaattgtaaatatgtgaatttatccctaatgagcaattcagaggcgatggtggcaaggaaaaactcaaaagggaacccatcctcatctgggtgacaacgaatagtgcaattataaataaatcccttctataactgtgtactacatggacaaatagtgcaattgcgcaaccagtaaattccttacagttttcacatgaagtctcgtttgttgaacctatccactttccactgatggagacctgagtgcaaaactgctggtggcaaccgcagccccaaagccaccacagcaattgcagtcccaagccatcacagtacaactccccatatgagatccccaagccatctccacagcccccaggtggcactatccccagcaattccaatgatcttcaggccgtccatgtggggccacccccagcagtgAGAACCGATGAGAACTTCAACCAgcagtagggcatcaggatggatcaggcaggtccagggagcagaaggggtcaggatcactggtatctcaggagtagcatgtgtagctcaacagagagggagagacacagagagagacacacacagagaaagagacagagggagaaaggggaaacagcatccaaacatccctgttcaccacaacactctatgaatgtgaaccctccagatctgctcttttacctaagaaaaaactattcggaaaaggcttgactaaacaaatatattttcagcctagacttaaacactgagactgtgtctgagccacGAACACTATTTGGAAGGCTGTTCcctaactgtggggctttgtaaaaGAAAGATCTACACCTACTACTGTAGCCtacactattcgaggtaccaacaaatagcctgcacattttgattgaagtaggcatgacggatcataaaagaccaaaatttcACTCAGACACTGAGGCGTgaaaccattcagtgctttataggttagtagtagtattttataatcaatatgaaatttgcttgggagccaatgcagtgtggataagataagGGTGaagtggtcatatcttctggttctagtaaggactctcacttatgcttttgcatttgcatttgcttTGCATGTTAAAGTTCAAGAAAATGGTTGTTGtgtatttctgattgttttacTCTTATAGTAACCAAGCTGGAGGATAAGAAGAATATTGTGGATGTTGGCAGAGAAGCAGAATCATCTTCCTCAACTACACCCCTGCCACCAAATGAATCTTTTAATGAAGAGAGCAAACACTCTTTCTCATTGATTTGATGCACCAACAGATTGGGGCAGATGGTGGAGGACTTCCTAGAACTATAAAGGAGCTGAATTCACAGCTGAACTTTAAGAGAAATGGAAGACTAGTTGGGTGGCCATCATAATATTTACTTCCATGTTGTTGGCATGATGCAAGGTGTAGAGGTGTGCAGGCCAAAGGCATTGGGTGTTGACCGTGAAATAGACTCACCagtgacaacacacacattaccagCTACACCAGGAGCAACACCAATCCCTTCTACAACACCAAAACAATCTTAGAgtagagaagaaaagaagatgaCTTTTTGACTGTTCTGGACTTTTTAAAGGAATCTGCCACAGACAGTAGGGAGTACCAGGAGGAAACTATGGCCCAGATGAAGGGGTTTGAGGCACTAATGAACAGATTCCTGGAGAAAATGTGACCTCTTTGCATTCACACCACACGGACCATCTTATATTTGTAGTATAATaaacagtattgtgcaaaaatcttaggcacatgcaaagaaatgctataaagcaaagatgccttcaaaaataatgaaattaaacatctGTCCATAAAAAATCCACTATTAAAagcagtaaactgtaataaactaaacaaagtcaatagtAAGTGCAATAACCCTttgctgtttaaaaatgcatcagtcgTCTCCggtacactttgtgcagttttataaggaaattagctggtaagcttttctgagcatcttggagaatctgccataGGTCTTCTCGAGACACTGAATGTCATAcgtgtttctgtttttgcagataaACCCAGACAGACTTCAAtatgatttttgtctgaaaagtggtgtattatgtaatatgttgctttctttactgccatacaaacattttcctgtaacatttaatttaatttttattgggaaagtaatgtttggaatcaatgtttttattgactcaataatgcagaagttataaaataaatatttaagacaaaatttgcaattaaacaaattagggtgcctaagacctttTCAGAATACTGTATGTCTGGACAATTTTGTTGTAATATTAACATGTTATTGTATCtacttacattatatttatatcccTGACCTCATTCTGTTTACAAACCATTGAGAGCATCTTACTTTGATGATGATTCCTCCTTCATTTGGAACAATGATTTGTCATGTTACATAGCATAATCCCAGTGTGACAGGATGCTAATGTTGGGTTCACCTCCCACTACAACTGAAAACAGATTGAAACATCATTGTGGAAAATCAAGGGGAAAATCCTTTAATAATGAAAAGGGTAAAAACATGTCATAAGCAAATCGAATGAATGTAGCATGCAAATTTATAGTCAACATGCCTACATAAGTACATTTTAGATTGCATTATCATCTAAACATACATTAAACAGAGTTCTTACATATGAAAAATAGGTCTAACATTGTCATCTGCTTGCCTTGGACAGCCATGTGGGTGCTCCTCACCCACTTCAGTGGTACCAATGTACATGCTGTTGAGTAAACATGTTGCCATAATTATCATCACCTCAGTGTAAATGTTGTTCTGCAAGGCTTTTTATGGGTACTGTTGAATGACCCCAGGCAAGTTCCGCCTTTTGCCCCTGCTACAGCATCATCAGGAGAAAATCAAACTGACTTTTGGAGACTCTTAAAAAAGCATAGTCATCCATACTCCATCACTCTGCATGATGATCAGAGCATTATAGTGGCTGTTGCTATCACaagagttaaaaaaacaaacaaacaaaaaaacaacataaaaacaagAGATCGGTATTCTGAAATATTGCATGGCAATTTTTTACGAAAATAAATTGTTCTATGCTTTATGAAATCATTAGATGTCTATGCAGTTCTTTGGTAATAAGTTATAACATAAGGTCACAGTGTTCCAAGTGTTttgaaaattgtaattttttttttaatttcacaaacaGCATAAAGTAGGAAAGGCATACAAAAAGCATAACACAtacaaaatgtgcaaatgtggCTGAGTAGGAAAGAGTAAcagaaacaaaaggaaaacaaaaattagGGATCATCAAAGAATCCAAATTCACAAAGCAGGTACAAAAATTTCTTTCCACTGCATTTTTGGCTTATTTTTTACGGATGTAAATAAAACTACAATATCATTATGAAAGGCTCTAAAATGAGGTGTTAATGTTAAGCATCTGCATTTATGCACAAAAGACTTGGAAAGGATAAGCAATACATTTAGCATAACATCTCCTCTGTTATTATCTGTACCAAAAACGATGTGATCTCAGGTGAAATGGGGGATTCCAGGAACTTTGGATTTTCCCAAGTTATGCACATCTCCCCAAAAACTCTTTACAAATTTATGTTCATTAAACAAATGATCTGTTATCTCATCATTGACTGTACAGGAAAAACATCTTTTATCCTCAATTTCAAatctgtgatataaaaaaaattatatgctGTTCAga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61618 lncRNA downstream 87004 24650117 ~ 24651824 (-) False lyst
TU61657 lncRNA downstream 95912 24642096 ~ 24642916 (-) True G52157
TU61647 lncRNA downstream 133081 24548671 ~ 24605747 (-) True G52147
TU61654 lncRNA downstream 174542 24563956 ~ 24564286 (-) True G52154
TU61566 lncRNA downstream 322402 24415319 ~ 24416426 (-) True G52076
TU61790 lncRNA upstream 44845 24787513 ~ 24787859 (-) True G52282
TU61791 lncRNA upstream 46223 24788891 ~ 24789095 (-) True G52283
TU61808 lncRNA upstream 136829 24879497 ~ 24881956 (-) True G52300
TU61812 lncRNA upstream 178004 24920672 ~ 24923852 (-) True G52304
TU61818 lncRNA upstream 259452 25002120 ~ 25010303 (-) True G52310
XM_034302739.1 mRNA downstream 2940 24700830 ~ 24735888 (-) False herc4
XM_034302737.1 mRNA downstream 2951 24669150 ~ 24735877 (-) True herc4
XM_034302738.1 mRNA downstream 2951 24677074 ~ 24735877 (-) False herc4
XM_026939265.2 mRNA downstream 2960 24661985 ~ 24735868 (-) False herc4
XM_026939232.2 mRNA downstream 86981 24451986 ~ 24651847 (-) False lyst
XM_026939252.2 mRNA upstream 70306 24812974 ~ 25090822 (-) True LOC113542016
XM_026939333.2 mRNA upstream 565638 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA upstream 565638 25308306 ~ 25330164 (-) False dnajc12
XM_026939496.2 mRNA upstream 752008 25494676 ~ 25504756 (-) True msh6
XM_026939162.2 mRNA upstream 943016 25685684 ~ 25697851 (-) True LOC113541965
XR_004577835.1 other downstream 2941 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 86981 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 86981 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 698728 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1284611 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 1167350 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2795108 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3690552 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 4459264 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 4936743 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile