RNA id: TU61818


Basic Information

Item Value
RNA id TU61818
length 7497
lncRNA type intronic
GC content 0.42
exon number 2
gene id G52310
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25002120 ~ 25010303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtaGTCCAACCTAGAGATAATAAAAGtgtgaactagtttttctgcatcatgtagtgacatcatatttcttatcttagcaatatttctgagatgaaagaaagctatcctagtaatattatctacatgaatttcaaatgaaagaccggagtcaataatcacaccaaggtgttttactgctgcacatgatgaaacagaaattcCATCCACAGATACTACGCAATTGGAAAGCTTACTTCAAGCTGCATTTGGTCCTAGTTCATGTACTTCTGTCTTCTGTCAGAATTAAatagaaggaagttaataagcatcaaTTAATCGTTAattgtcctttacacattcctcaactttattaagctggtgtctctcatctggctttgctgaaacatacaactgtgtatcatcagagtaacagtggaagctaataccatgtttatgaataattttactcAGAGGTAGcattatataaagaaaaaaacagtgggcataaaacagaaccttgtggaacaccaaactttaccttagtatgtgtagagaagtcaccatttacatctacaaactgataacagtCAGTCatataagacctgagccaggagagggcagTTCCCTTaacaccaacaacattttctagtctatcaaggagaatagtatgatcagtggtatcaaaagctgcccTAAgttcaagcaacacaagcaaggagacacaaccctgatcagaggccagtagtaggtcatctACCACAGGTCATCTTCCCGTAACTAGTAcggtctctgtgctatgatgaggcctaaatcctgactgatacatttcagttaaaggtctggtgattgacttggccagtctaaaaccttccacttttttcccctggtgaggtcttttgttttgttggcTGTGTCTTTTGGGTTATCTTTCTgcatgaagttcctcccaattagattggatgcatttctctgtaaactggaagcgaatgtttctgtagacttctaaattcattctgctgctaccatcatgagaaTGAATGGCTCCCTAATTTCACACTATATGCAGTTCGTAGATTGCAACCTGAGCAGACCATCAACACTAACTTGACCTTTGTTTAGTTTAGAAAGGCTGTATTAAATGCATCAGCATCAGATATTgtacttcaattcaattcaattcagttttatttgtatagtgcttttaacaatggacattgtcacaaagcagctttacagaaataaattgattcacaaaaaaaaaaaatattgtaaatgtgtgaatttatccctagtgagcaagccagaggcaatggtggcaaggaaaaactctgagacaatatgaggaagaaaccttgagaggagccaggctcaaaagggaaccaatcCTAATCTAGGTGCAATTTATAAATTGCGGATAGtgcaatttataaataaatccctacTATTATTGtgttcatcacagtttttgcaagaagtccggttggttaaaatctatccactgtcccctgatggagtcctgagtacgaaggtgcttgtggcaactgcagccccaaagccactactgcaatcgcagtcccaagccattacactACAGCTCCCCACATGTGATCCCCaaaccatctccacagcccccaggtggcaccatccccagcaatccgaatggttcttcaggccgtccatatggggccacccccagcagcagcgagcgaactcaaccgatgagaactccaaccagaagtagggcattaggatgggtcaggcagcgaggaggagcagaaggggttaggatcactggcatcactggcatctcagaagtagcatgtgtagctcgacagagagtgagggagagagagagatggagagaaaggaagagattgttaggtgagcttttgtcctctaatggttaagcatgatgtactttgcatacagagtgcaagcagggactccggcaagactgcTAGcgttttctccctaattatttttcttttaagtggagctaccttatctagtgagttgcagaacgttgattctaaacattcagttgcctggtcaagttctttgggatcagacggtgatccaatcatggttgataaatctgggagattactgataaaactctgtgcagttgttgacgtgaacatacgtttgacatggtgacgtggcaaggtgcatatactatgattaatacacattttaaatgagatgaggtaatgatctgagatagcttcagactgtggacatgagactatattttctatatttaatccgaatgttagtattaaatcaagagtgtgaccacccctatgggtgggtcctattacattctgattaacccttacagaatctagaatggacacaactgctgttctcagagggtcatctggattatcaaaatgaatattaaagtctccgaCAATTAATGcgttgtctaaagaaacaaccaggttagagatgaaatccgcaaattcacataggaattccgaatatggccctgggggtctgtaaataataattactggaatcacctgggtagacctatttttagtggctacgtatgttatgttagaataaagaacttcaaatgctttgaatttatgactaggtttttgtgtgacgtctagattatcattataaatgactgcgacgcctcctcctctgccagttagacggggctgatgtatgtaactgtacccgggaggactagcttcatttaatgctacaaactcgtttggtttaatccacgtttctgttaaacacagtacatcaaactcctgatcagtaatggtttcattaacaataagtgctttagatgtaagagatctaatattcaacagtcctagcttcagatcaacggtgctggctatgcattcggtttggtttaattttgttaattaggttactgtctcagtatgtctataattttgtttagctcggggaacagacacagtctcaatacggtggaacctaagtgacaactcagtgcagctagcagatggtcggtttagcctgcttgtctgctccctggccttggccctggattgtcaccgattaactaggcctgttctgataCTATGTGCTAtactgcaagaaatgagagcagcaccttcccgagtgggatggataccgtcccgccctaacaggccagccttgccctcaaagttagtccaattatctataaagcccacattgttttcggagcaccacctggacatccagcagttcagcgaccataacctgctgtaagctacattgccatgccgcattgggatggggccagagcatactacagcatcggacatcgccttcgctaatttacacacctctaccatgtactcttagtaacctcagactgacgaaggcgtatatcattagctcctacatgaataactatctttgagaacctgtgcttgcctaagaccctaagattacctgctatgtctggCACCCTGGCTCccagtatacacctaactaaagctgctggtgcccgtaaaggcctagctaatttcacgtgccgcaagatagagtcacctataaccagagctctttcaggtttctcagcgggtgcttcactgaggagagcaaacctgttggacacgtgaagcggagaggagtggtgctcctgtgggcgagccttagcgttagctttggctttgtgattatgccgctgagtcgtcacttattcgccccgctgtgagggctctaatgccggagttgggggattactaactccaCCTACGGCATCCAGACTGTCCCCTACAGAAAATACACTGCTCTCACtgtcactaaccctctctagagtctggatgcgcacctctaatcctgcaatcttctccgtcagagagctaactaacatgcatttatcacaaataaagctattactaatgacggaggaagagtgactaaacatcctgcactcaacacactgaacaagctgaatgtttgacatgttgtttgacgcaccttagtcgaagatttgttgatattattgtagacGACGTGGTTCCGGTGTGGATGGCCTAcgctcgctgtcttgacaaaaatacaaaagcgcactttgagagaaagaaaaatgaaaatacggtagaaaagaacgtgaaaaatacaacagatgaaaacgatagcacaatattattgatttaaaaacgaaagaaacagtatagttaaggCGCCaatgcaggcaagaaactcctgGCAAAAACTTGACAGCTTGgcaaagagtgagagagagatggagagagaaggagagatttttaggtaagcttttgtcctctaatggttaaccCTCTGGGGTCGACGGTGGCGCcgtcacaatatcacaatatcaactcacaatatcaacaaatcattgtgcttttgtaaaataaagaaaatatacaggTTGTGCTTTCAACCGTCTCAGTCTCCGCGCATATCTGTTTGAAATGCGTCactaaaatgaactgaaactcAGCGAATACTTGACACACAGATATGAGAAATATATCTATGGAAAGCTTGAGgtgtctacttttaaatgaaaacaaatattctCAGTTTATGTAATCCATGTGAAACCAAGGAGAGGTACAGTCTTTCCGTCTCACTTCATTATCTGATAATGACCTGAGGCAGGACACACCCACACGCTATTCAGGGAAAATAGTTTGGTGATTCAAGTACGAGGCACACGTCCCCCCAGACAATGCCATAAAAAACATCAAGTTTCCACATAGTTTCTTTCTTTGACTTTCCTACGCGTTTGGAAGATGGCACGCTATTCAGGCGAGGAAGCTCTTCAGATGATTTTGGACAGCGAGGAAGAATTTACCTTTTCCTCAGAAGAAGATTGCGACTCCGATGACAAACGGTTGCATTTTGAAGAGCAAATTGATCTAGCTGAGGATTTTCCTGCAAGTTGTTACGATGAGTAAGTCCTATATAATTCCTATTCTGAGaatataaaagagaaattattttcAGACTTTGTTTTGCCTAGTTTTGGCTAGCTTTTGGCAGCCTATGTGAAACATTGCCTTTCAATGTCAATTACAAATGTCCAAAGGCTCTGGGTACCATGTGTACATGGACAATTTCTACACAAGTTCAAAGCTCCTAAAAGACTTGCTTTACATGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGTATTTGTGAAGTGGATGGACGCACGAGAGGTATCTGTCTGTTCTACCATCCATTTTGCTTATACAGGAGACACTGTGCAGAAGAGAGTGAAATCACAAGGTACATGGAGGACAAAGACATTTCCATGTCCTGCACCTGTGACTGCATACAACCAGCACATGGGGGCTTTGACCTGTCTGATCAGCTGTTACAGTAATACACTGCACAGCACAAAACAATGAAGTGGTACAGAAAGATTTTTCTACACTTCTTGGACATTCTtatatttcttttgtcctcacaTTCTTTCTTGTAGCACTTCCCTCTTAGTCACATACCTGACTGAAAGTCTCATTATGCAGCTCATTAGGCGGGTCTTTGTCTTCTCAGGTGTGAATCACAGCATTATGCATGATCATTCACGCCCCCTCGCATATGGACTTTCTATACAAAAAGTGTCttagaaaatttaaatcaatATATTGTTTTCTCTGAATGAGTATGCAGGATGATTTTCACGTCATTTTGAAGCAAAAACTCTAGGCTACAAGATCCAGTTCTCAAAAGTCTTGTGGCCAAATGTTTTGAATGAGTTTTATGGCCTTATTTCGgtaactttttttgttgttttttcaataACCAAGCATAACtgttattttctccaaaatacaAACTCATGCATATATGCTGCTCACATATTATTGTAGCCCAGTTTGTGCTGATTACAGTGTAATCAGACTTTagccatttatatttttataagcaaatgaaaaatgcacaaatgtcAGGGCATGTCAAAACTTCTCCAGGGCCCCGAAACACCCTCAGACCCCAGagggttaaggacaatgtactttgcgtgcagagtgcaagcagggactccagcaagactagctatgacagcataactaaaagggagagccagaagctaagacagacatgagggcaccctgggacataaggcagccagccactccaccgtcaacaaacctgagtgaatgcgtgagagtgggggggcgacagcatccaatcatcccagttcaccacaacacactatgcccatgaaccctccagatctgcttcTTTACCTAAGAATAAcgattcacaaaaggcttgactaaacaagtatgttttcagcctagacttaaacactgagactgtgtctgagccccaaacactaagttaccgctgcacatgatgaaacagaaatgccatccagagttattatgtaatcggaaagcttacttctaactgcatgtggtcctagtataagtacttctgtcttgtcagaattaagtaagagaaagttaataaacatccagtttctaatgtcttttacacatgcctcaactttattaagctggtgtctctcatctgcCTTTGCTgaaactgtgtgtcatcagcgtaagagtgctaataccatgtttatgaataattttgcccagaggtagcatatataaagaaaagaggagtgggccttgcgggacaccagactttaccttagtatgcgaaGAGTACTTGAGTTTGTGTTGCTCTAGCTGGGGATTCCCTTGTTGTGTCGTCGTTTAAAGGGATTTTCCAGCGATGCTGATTCATCGGCGGGCTGGTTGCTTTTGAGTGGCGTCTTAGAAGACCAATCAGGATGGTGGATGGAGTGAGGAGTGTACTGGTGGAGTCTCGTAGGCAGGTTGTAGGGGAGCGCCTGCTGAGTGTAGAGGCGAAAGTCGAGGAGGCTTTGCAGGAACAGGCCACGGAATACATAGCTGATGTTCAGTGTTAGCGTAGGAGAGAGAGCACTTTGTGATCTTGAAGGCTAAGATCTCTCTTGAAGCTGTTGGTCTATGAGAACTCTCCTGGAGTAGCTTATTGATGAGAACTCATTGTTTCCATGGTGTCCGAGGGATTTAACCCTTTCTAGCTGGGCTGAACCCAAAATTTCTGCTCCAATCGGCTTGCTCACAGGGCAGGGTGTAGCAACGCTCTCCGCCCATACATTATTCCATCTATTGTCTTTGTGGTCAAGTAATTTCACgccttttctttctgctttttataGCATGTCGAAAAAACGTTTAGTCCAAACTgttaatacatacatataatgaCATTCTACCTGAATTTCCTTATTCTCATCTTTCAGACAGTCCttcaaagaacacacacataataaacaTCACATACTTCTTGTTGTtgacacattcattaacattatgTTACCTGTTAAATGCTTAAAAGCAATTGGTGGCTATAGGCATGAATACAAACCATGAATACAAACAGAGATCTGCTGAGGCATGAGATGAGGAAGATGCTCTGGTTTGTCAAATGGCACAGttgacttttacctcagacaGTAACAggtgatgtggatgatgctacTAAAAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61812 lncRNA downstream 78268 24920672 ~ 24923852 (-) True G52304
TU61808 lncRNA downstream 120164 24879497 ~ 24881956 (-) True G52300
TU61791 lncRNA downstream 213025 24788891 ~ 24789095 (-) True G52283
TU61790 lncRNA downstream 214261 24787513 ~ 24787859 (-) True G52282
TU61766 lncRNA downstream 259452 24738828 ~ 24742668 (-) True G52259
TU61895 lncRNA upstream 175532 25185835 ~ 25189496 (-) True G52373
TU61982 lncRNA upstream 324579 25334882 ~ 25335127 (-) True G52438
TU61995 lncRNA upstream 348318 25358621 ~ 25360911 (-) True G52451
TU61996 lncRNA upstream 351218 25361521 ~ 25362463 (-) True G52452
TU61997 lncRNA upstream 352685 25362988 ~ 25364044 (-) True G52453
XM_034302739.1 mRNA downstream 266232 24700830 ~ 24735888 (-) False herc4
XM_034302737.1 mRNA downstream 266243 24669150 ~ 24735877 (-) True herc4
XM_034302738.1 mRNA downstream 266243 24677074 ~ 24735877 (-) False herc4
XM_026939265.2 mRNA downstream 266252 24661985 ~ 24735868 (-) False herc4
XM_026939237.2 mRNA downstream 350273 24461218 ~ 24651847 (-) True lyst
XM_026939333.2 mRNA upstream 298003 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA upstream 298003 25308306 ~ 25330164 (-) False dnajc12
XM_026939496.2 mRNA upstream 484373 25494676 ~ 25504756 (-) True msh6
XM_026939162.2 mRNA upstream 675381 25685684 ~ 25697851 (-) True LOC113541965
XM_034302898.1 mRNA upstream 739750 25750053 ~ 25770046 (-) True mertka
XR_004577835.1 other downstream 266233 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 350273 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 350273 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 962020 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1547903 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 899715 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2527473 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3422917 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 4191629 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 4669108 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039450 True 1801 lncRNA 0.34 1 NC_007132.7 35897598 ~ 35899398 (+)
grasscarp (Ctenopharyngodon idella) TU190286 True 18199 TUCP 0.41 2 CI01000032 3670229 ~ 3688726 (-)