RNA id: XR_004577848.1


Basic Information

Item Value
RNA id XR_004577848.1
length 2078
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113542024
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25265631 ~ 25288587 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtcTACAggtgttcataataaagtggatggtgagtgagTGGCTGCGTCGGAATATCCCCACTACCCTACTATTACAGTAGGTGAAAAGCAATACACCAAAGGAGGTGTATGTCCGAATTCTCAGTACTCATAAAACAGTAGGGGAGAAATTTCCGGATGACCTACTGCTTCCAAAGAGAATTTCATAATCAACAGGACTGGTGAGGAAGAGctgtcagaatcaaaaatggCAAAAGGCAGTGTGTCAGTGTAAGTGCTACAGGTATTAAACGTTGTTCCTTGTGCCTTGTGGTATTGTattcatactacacacacatactgatcaGTACATACTGTATCAACTGCCAagcagtaggtactgaatcgaaTGCAGTATGTACTGTCACAGTACATGATTTCAGATGCAGTCTATATCTCCTCAACCATTTGACATACATTTCTGGTGTACTTCaccagaaaaacagagagatggGAGTCTACGGACATGCTTGTTCTTAGCAGGACAGAATTTGAGTTTAACAACCCTGGTTTATATGGATCGTAATCTAGACATTCTGTctaaaaatctgtgttttttgtatgtatatCCAAAATTATGTGCATGTGTAGATTGAGGTTTAAGGACATTTTTACTTGAATAGATTAACACCAATAACCCACCCTAAAAGACAAATAGGAAGattcttgggaaaaaaaagggcaaataGTGCCTATTCTATATTAATCCGGTGAGTGCGTTCAGCTTTTGAACTATACCAGTGTTTGAACGAGATTCAAAATAATTACCCATCTCATGAAACGTTATCCTGCAGACAGGCACATAAAACTGTGTCAAATTCTTGTCACAATCCCAGTCAGCATGTGTGTCATGTGCATGTATATTTGAGTCATGATGCACTTGTACAATATAGTAGCTGTATAAGAAAACACAGTTCATCTTACAGATTTTAATAGGGATTGGGTTCAAATACTTGTTTCTCAGGCTGTAAATCTACTCAAGTTAAATCTGTTATATTGCATACTTGTGCTAATCTGTGAAAGAATTTTTAATGTTGATTAGGTTACTTTAAAAGCATAGcagcaatcagccaatcacattgcaGCACACACGTCACAGTTTTACCTTTATGTTACCATCACGATAGTATGTTTATCCGTGGTTCATTTAGTGTACTATACAAGTTATTGAGAACTATCTAGTTGTGGTGCAGTTGGCACACATTTGCTTGGCCCCCGCAGATCGCTTCTTGTGactttatttcttattactaTGGCGTCCAAGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTACAGTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGaaGTGCGGGTCAATGGTGAAGGGAATGGGGAGTGAAGGAAGGTAGCGTGCTGATGGCAGTGAGGGGTTGTCCCGGAGTGGAGTGCGGCGAGCAAGCAGCGAGCAAGCGGCAGCAGCGGGATGtacaattatacagtataaagcacATTAAGACCTGTCTTCTCATTATAGACAAAGGTTCTCTAGTCCATAACCTTCTAAATGTCACTAATTTCATCACAGACCAGGAAAATGCAGAGGAGATGTTTAAGAAAGAATAGGAAGAGATGCCATCAAGTGGGCCCTGCAGATTCTGATTCAACACCTGATGAATTGACAGAGTAAATACAGGAAATAtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61876 lncRNA upstream 9599 25255512 ~ 25256032 (+) True G52363
TU61873 lncRNA upstream 14369 25250975 ~ 25251262 (+) True G52360
TU61872 lncRNA upstream 15125 25250049 ~ 25250506 (+) True G52359
TU61864 lncRNA upstream 23068 25242312 ~ 25242563 (+) True G52351
TU61861 lncRNA upstream 33954 25225687 ~ 25231677 (+) True G52348
TU61941 lncRNA downstream 5051 25293033 ~ 25293271 (+) True G52406
TU62001 lncRNA downstream 90371 25378353 ~ 25380775 (+) True G52456
TU62042 lncRNA downstream 195821 25483803 ~ 25484191 (+) True G52483
TU62058 lncRNA downstream 274420 25562402 ~ 25565205 (+) False golga4
TU62246 lncRNA downstream 556253 25844235 ~ 25846899 (+) False acoxl
XM_026939267.2 mRNA upstream 26462 25205139 ~ 25239169 (+) True tsnax
XM_026939268.2 mRNA upstream 26462 25205139 ~ 25239169 (+) False tsnax
XM_026939266.2 mRNA upstream 26462 25205139 ~ 25239169 (+) False tsnax
XM_026939276.2 mRNA upstream 73783 25183153 ~ 25191848 (+) True gpatch11
XM_026939337.2 mRNA upstream 825176 24416519 ~ 24440455 (+) False cacul1
XM_034301836.1 mRNA downstream 69407 25357389 ~ 25364017 (+) True LOC113541878
XM_026939058.2 mRNA downstream 69407 25357389 ~ 25364017 (+) False LOC113541878
XM_026939057.2 mRNA downstream 69407 25357389 ~ 25364017 (+) False LOC113541878
XM_026939297.2 mRNA downstream 77133 25365115 ~ 25386138 (+) True sirt1
XM_026939423.2 mRNA downstream 162556 25450538 ~ 25459746 (+) True LOC113542106
TU61306 other upstream 1207744 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 1460136 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 1568337 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 1810082 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2150592 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1697996 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1909927 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1909927 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1909927 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 3159395 28447377 ~ 28448311 (+) True G53692

Expression Profile