RNA id: TU61895


Basic Information

Item Value
RNA id TU61895
length 3635
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G52373
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25185835 ~ 25189496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctttttaaattaaaaattttaattagaaattaaaattagcAACCTTTAAAATaagtcaaaattattaaaacctcAATTTTAGTTGAGAACTGTAATAATCAactataatttacattttctgaagcAAATGTGAGTGGTGCTTGCCCATGCAAATTCGACACTGACATGCAGCTGCACATGCTGGTTAGTAGGAGGAGCTACATGTGTGTAGAATGTAATTCTCCTCAGTCTGCCAAGCGTTTTGATATGTCACATGTGTATGCTGTAGTAGAtttgtgattccacttattttggggGTTAACGTGCACAGAACTTGCATGTTATGTCATTAAAATACCTATAATGCAATTTTCCTTAAAAATGAAGTGTAAATTTATCACAAACTTTTCcacagatataaagaaaaaaataaaatttgttgaAGGTGGTGCAGTCACAAATCCTCTTGagtacattcagggcatggtcatgaagatacttatcaagttttgtgatgatacttggatgcattgctgagatacaccctcagATCCTGTTTTTTGCTAGCACATTCCCGGAGAACgggtttgaatatcaaaattccttttgtaacttttgttcagacaggtctcaagatgatatGAGCCAAAcatggtgaagattggacaaaatttggaggaggggtagcaaaaatggcagtaagatgtaagcatttttggcatgttattgtaacttttgacaaGTAGATGGGAAGCTTACTCGTGAAGCTTACTCTGAAGATcatgtgtgccaaatttggtgatgactGGAAAAAAGTTGTAGGAGGAGGTAgcgaaaaaaacagtttttgacaaaatccactAGAGCATTGGTAACACTTGGCCCAAACTTGGCCAAAAAtttgttccttagaccctccccaatcagtgtgccaaatttcacaacctTTGGTGCCTGGCCCCTGATAAGTATTGTCAATTATAATAGTGATGCTTGCATTGCATAGCAAGCACCACCAGTAAGTATGGACAATTATAAAAGTGATGTTTGCATTGTATAGCAAGcacaactaataataattaactatGATAATAATTCTACAATAGGAACAGtcaaagaagagaaagaggaaagcaatgtgtgcatgtgcgcaAGGGAAAGACAGTGCACGTGTCCATGTGAGAATTCGCACTGagcttataaaaatgaataatcacGAGCCCAGTGAAATATGTGGCCTAGTATGTGAAACGAGGGGAACAATAGGGAATGGAAATATGGTGGTGAGTTTAAGAGACTTGAACATGGTGGATGGCTAGTGAcagaaactataaatatatgtatataaaaatatttccaatgaCAAAAGCTCCAAAGCGCAAAAATGTTAATGGGAATAACGCTTCAGAGTTTGGATCTTATTTGTTCTTGACAAAAACTGAGATCACTGATTGAGTGACCACATTAGTAAGCACAGAGTGAGATCAGATAAATGAGATAAGAAGGAGATCAAAGACAGAGGAAAGGAGATTCACGGTGGTTCATGCGATTCCCTTTGTTTAAAACAATActaatttaaaaacagtttgCAGTTTCAAATTACTCAACACAGTATAACtttgaaagaaataataatgaacacGTTTCCTGCCCAGATGCTCTGCTGAATAATTCGACACCAGTTTGGAAGATCTGGCAGAAGTCCTAGGAATAGTTTGCAAAAGATGGGTTCACATATTAATCAAATTATACGAAAATTTGATTCCAAAATGCACATTATTGTTGCATTAAGCGACTGAAccagaagaaaaaagattatTCCCTGTCCACCTTATTTTACATGCTTGAttataactgaaaaaaatgtatagcaCCCCCAATGGCCAATATGAGTGACaaggcagccttttttttttttttttattcctgggTCACTAGAGGGACCTAGCATTCAAGTTTCATAACAATTGCTCATTTTTAACCCcatcaaatgcctgctgaaaactAATTGGCTGACAGCAGCCATGTTTTCTAAGCGACCAGGTCATCATTAACAATACCATTACCAATTAGGATAAAGATGCAGAATACCAAGTTTCAGCTCAATTGAACTTACAGTTCCTGAGAAATATTTTTCTGAACGTAGCTCTGCCCCTTATTGATGACTATGCCCAAAACTCAGCAGTCCTTCTCAGGACTTTGTCGTGAAGGGGCCTGTGTAGTTTCGTTTAAGTACATACAAAAATCAtaagttacagctgtttgagtgaATTAGACTCTGCCCCATTAGAATTGATTGGCAGGTGGCAGCTATTGTTCATAAATCACAACATTTTTTGACCAATATGGAACCAACTTTGTGAAAACGTGACAAAAATTCTAGGACTAGTTCCCAAAAGTAGGTTTTGTAAAtttatctggtgtcacccagaagaagatGGGCTCCCttatgagtctggttcctctcgaggtttaTTCCTTGTGTCACctctgggagtttttccttgccagcATCACCTCTGGATTGCTTATTAGCGATCTAAATCTATATGCAGATTTCTGGAAAGCTacattgtgacaatgtcctttGTTAATAGCGctatataattaaaattgaattaaatcaaactgaattaTATTCTGATGTTCTCATCAAAAACCACATTATATTCTCATATTCTGATCACAGATTATATGGGATTAGAGAGCCCTTACATAACATAATACATTCACCACACCAgctctgttctttttttaataacaagtATGATATATTTCAGTCTGATCTCCCAAAGCAGCATAATACATAATCAATACTGGCCAAAGTTGTCAGTGACCTACTACTTGAATAGTGATAGTGGATATGTTTTTGCCCTGGTACTTTTAGACTCTAGTCTAAACCTTTAAGCACATATGACACTACAGACCATGATATTTTAACAGACAGGCATGATAACATAGTTAGCATTTGTTAGCATTAAGCATGGtttttcagagcctaaaaaATTACAATATGGTGTTCAAGGTTCTATTTTAATTTCCTTACTGTTCTCCTTTTATATCTAGCACCTAAAGCTGTAATGATTCAGGGTATCGCATCGTATTGTTTGATATGAGGCTCTTTGATACAAGGTTCTCAATTTGATATGACTGAGTATTGAACAATAAATTCAACAGACTGCACAATAAAGTAGgctattgtttatattacattagcATTGTTTACATTAGTCAGTATAGTGAGACAGCAACACGTCATCACGCCACCATAAGGTatttaagaagaagaacaacaaatgaagaaatattcTGAGCACTACTGTGTCCCTCTTTGCACAACATCTTCAGAAATGAACAacttcactattattattattattattattattattattattattattattgttgttggaTCAGTACTGACCTTCTTTTCCCAGACCTTGTCCCACAGTGTAGCCCATTTTCTGCAGCAATGCAAACCCTTTATTCTCACTGCTTAGAGAGCTCTGCAGAGCAGCATCTCGTCTGTTCTGCTCTTGTTCCTTGTAGCTTTTCTGCTGGTTAAgaatatttttctctttgtgcAAAGTCTCTCGCCTTAGAGTCTCCTTTAAACGTTTCACCATTGGCATGCCAGGCCGAACGTCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61818 lncRNA downstream 175532 25002120 ~ 25010303 (-) True G52310
TU61812 lncRNA downstream 261983 24920672 ~ 24923852 (-) True G52304
TU61808 lncRNA downstream 303879 24879497 ~ 24881956 (-) True G52300
TU61791 lncRNA downstream 396740 24788891 ~ 24789095 (-) True G52283
TU61790 lncRNA downstream 397976 24787513 ~ 24787859 (-) True G52282
TU61982 lncRNA upstream 145386 25334882 ~ 25335127 (-) True G52438
TU61995 lncRNA upstream 169125 25358621 ~ 25360911 (-) True G52451
TU61996 lncRNA upstream 172025 25361521 ~ 25362463 (-) True G52452
TU61997 lncRNA upstream 173492 25362988 ~ 25364044 (-) True G52453
TU62026 lncRNA upstream 260174 25449670 ~ 25450393 (-) True G52474
XM_026939252.2 mRNA downstream 95013 24812974 ~ 25090822 (-) True LOC113542016
XM_034302739.1 mRNA downstream 449947 24700830 ~ 24735888 (-) False herc4
XM_034302737.1 mRNA downstream 449958 24669150 ~ 24735877 (-) True herc4
XM_034302738.1 mRNA downstream 449958 24677074 ~ 24735877 (-) False herc4
XM_026939265.2 mRNA downstream 449967 24661985 ~ 24735868 (-) False herc4
XM_026939333.2 mRNA upstream 118810 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA upstream 118810 25308306 ~ 25330164 (-) False dnajc12
XM_026939496.2 mRNA upstream 305180 25494676 ~ 25504756 (-) True msh6
XM_026939162.2 mRNA upstream 496188 25685684 ~ 25697851 (-) True LOC113541965
XM_034302898.1 mRNA upstream 560557 25750053 ~ 25770046 (-) True mertka
XR_004577835.1 other downstream 449948 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 533988 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 533988 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1145735 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1731618 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 720522 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2348280 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3243724 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 4012436 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 4489915 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile