RNA id: TU61997


Basic Information

Item Value
RNA id TU61997
length 1057
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G52453
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25362988 ~ 25364044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTAATCAAACAGGCTGGGCCACATATCAACatgtaacatattaaaacatagAACATTGCCTAGCAAAACTGCAAAACTAACATTCTGTTATAACTGATTGTAATGTGACTGAGGTAACCTGAGTTTATGGCCCTGATGTCTCTGATGAAGACATTTCAAATTGCAGAAACAAAGTAATCATTCCACACAAGAGCTGCATTCTCCCCTTTGACAGAGGACTCATGAATTGTGCCTCAACTCATCTTTCCTCCTTTCATTTTCCCTCTCTAGGTCTAACTGTCCTTTCAAATCCTTACTCTGTCTTCTCAGCGTGTCAGATTTTGTTATCAGTTCTGCCATCTTGGTCCCTGCTGCATTCTCAGCTTTCTCTGCAAAGCTGTCTGCCTCTTTTTCAAGTGAGCTGCATACATTCTCAATggttcttcttttcttccttagTTCTTTAAGTTCATCTTCTGCCCTTTTTCTTTTGCCCATATGTTCagccttttcctttttcttcttttcattatCCGAGTGCATTCTATATCTGGTTCGCGCAGATGCACAATGATTCAGTAACTCTTTGGTAAGTGGAACTTTGGTCACTCCACTACACATTCTCACATAGTCACAGATTAGTCTGTGTGTGACAACTGTGTCCTCATCCACATTCCACATCTCCACTTCTTTATTGACAGAGAACCCACGCTCCACAGTTGCCTGTCCAGATGAGCAAAAGTTTCTGAACAAGGCTCCAGTGTTCATTATATGTGACACGCATGTACTCATGCAAAAATACATCAACTCTGGATTTTGCATTTGCAGTACTGAAGCTCTTGTTCTTCCCTCTGGCCTCACTGAAGAGGAACTTTCCAAACTGTTGGGTGATCTCATCACCcatattatgtataattaagAAAAAGCAAATGTTAGTAGCAGTATTGATTTTTACAGCACATTAAAATGTTAGTCTTCTGGAAACCATTTTGGACCTATTTAATAGCACAGAAAGTCTCAAATCTCCAACCATATTTCAACTAAATACACTactacatacataaataaataatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61996 lncRNA downstream 525 25361521 ~ 25362463 (-) True G52452
TU61995 lncRNA downstream 2077 25358621 ~ 25360911 (-) True G52451
TU61982 lncRNA downstream 27861 25334882 ~ 25335127 (-) True G52438
TU61895 lncRNA downstream 173492 25185835 ~ 25189496 (-) True G52373
TU61818 lncRNA downstream 352685 25002120 ~ 25010303 (-) True G52310
TU62026 lncRNA upstream 85626 25449670 ~ 25450393 (-) True G52474
TU62032 lncRNA upstream 95789 25459833 ~ 25460379 (-) True G52477
TU62072 lncRNA upstream 149373 25513417 ~ 25513806 (-) True G52509
TU62095 lncRNA upstream 230192 25594236 ~ 25594907 (-) True G52532
TU62139 lncRNA upstream 305922 25669966 ~ 25671990 (-) True G52555
XM_026939333.2 mRNA downstream 32786 25308306 ~ 25330202 (-) True dnajc12
XM_026939334.2 mRNA downstream 32824 25308306 ~ 25330164 (-) False dnajc12
XM_026939252.2 mRNA downstream 272166 24812974 ~ 25090822 (-) True LOC113542016
XM_034302739.1 mRNA downstream 627100 24700830 ~ 24735888 (-) False herc4
XM_034302737.1 mRNA downstream 627111 24669150 ~ 24735877 (-) True herc4
XM_026939496.2 mRNA upstream 130632 25494676 ~ 25504756 (-) True msh6
XM_026939162.2 mRNA upstream 321640 25685684 ~ 25697851 (-) True LOC113541965
XM_034302898.1 mRNA upstream 386009 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA upstream 386009 25750053 ~ 25770044 (-) False mertka
XM_026939300.2 mRNA upstream 408843 25772887 ~ 25791400 (-) True lhcgr
XR_004577835.1 other downstream 627101 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 711141 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 711141 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1322888 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 1908771 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 545974 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 2173732 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 3069176 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3837888 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 4315367 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_15189520_15194928.mRNA True 1409 mRNA 0.42 6 CI01000026 15189321 ~ 15194971 (-)