RNA id: TU62042


Basic Information

Item Value
RNA id TU62042
length 334
lncRNA type intronic
GC content 0.40
exon number 2
gene id G52483
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25483803 ~ 25484191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttttttcaccTTGGAGAGAAGTAAAACTGTAGTATAATGTGTCTGTAATGAGGGCTTTCAAAAACCGGTCCGTCAGTACCGTTGCAGAGACAGTGATCTCTTAAAGCTTGCATGTATCAGTATTGATCGGTCTGATAAAATACTGTAATGAAACCGTGttttcatggaccttgctttgtgcaaaggggcattgtcatgctggaacttgTTTGGGATGGCccacttagttccagtgaagggggaaaaacatcctatacaattgtgttAAAacttggccatatagtgtaactaaGCTACTTTATTAATGACAAACAGCTCATACAGTgctttgc

Function

GO: NA

KEGG:

id description
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62001 lncRNA upstream 103028 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 190532 25293033 ~ 25293271 (+) True G52406
TU61883 lncRNA upstream 195216 25266913 ~ 25288587 (+) False LOC113542024
XR_004577849.1 lncRNA upstream 195821 25265631 ~ 25287982 (+) False LOC113542024
TU62058 lncRNA downstream 78211 25562402 ~ 25565205 (+) False golga4
TU62246 lncRNA downstream 360044 25844235 ~ 25846899 (+) False acoxl
TU62264 lncRNA downstream 366549 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA downstream 367664 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA downstream 367664 25851855 ~ 25864241 (+) True bcl2l11
XM_026939423.2 mRNA upstream 24057 25450538 ~ 25459746 (+) True LOC113542106
XM_026939297.2 mRNA upstream 97665 25365115 ~ 25386138 (+) True sirt1
XM_034301836.1 mRNA upstream 119786 25357389 ~ 25364017 (+) True LOC113541878
XM_026939058.2 mRNA upstream 119786 25357389 ~ 25364017 (+) False LOC113541878
XM_026939057.2 mRNA upstream 119786 25357389 ~ 25364017 (+) False LOC113541878
XM_026939503.2 mRNA downstream 31026 25515217 ~ 25538325 (+) True kcnk12
XM_034301217.1 mRNA downstream 78225 25562416 ~ 25594936 (+) True golga4
XM_034301219.1 mRNA downstream 78225 25562416 ~ 25594936 (+) False golga4
XM_034301222.1 mRNA downstream 78225 25562416 ~ 25594936 (+) False golga4
XM_034302617.1 mRNA downstream 113094 25597285 ~ 25672004 (+) True itga9
TU61306 other upstream 1425916 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 1678308 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 1786509 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2028254 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2368764 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1501787 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1713718 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1713718 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1713718 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2963186 28447377 ~ 28448311 (+) True G53692

Expression Profile