RNA id: TU62246


Basic Information

Item Value
RNA id TU62246
length 2665
lncRNA type sense_over
GC content 0.41
exon number 1
gene id acoxl
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25801972 ~ 25846903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATCATTCCTCTTGGTTGAGAGCCATCTTTAGCTCGTcgtttgttgttgttaatgagTCATTGCAACTCATGATGTCCAGTGTGACATAGGCTCAGAGATTCGCCCTGCAGCCAAACACCTGGCCCTCCAGTCCTCTCTACAGTTGTATTTTGATACAAATCCAAATCCTTGTTTGGATCTCTTCCAGGTAGTCTTCCTAGTAAACCTTGAGTTTGGTGATGAGTTACTTTGTAGACTCCCTGAGCAGGTCTGGTCTCGCCAGTTTCTACTATGAGCTGAGAGAAACTGAGCTGGGAAGTCCATTAATTGCTCGTTATGGGTGGTGACAAGCAGAACAGTAGGGTGGGGGTACTGTGTGTATTCTCTCTCATGGATTCCAACATTACACTTAATAAAATGTCTAGTACTCATAAGTCTTGGAGACTAGActaggggtgtccaatcttatctaCAGTCATCCTGTTTGGCTGGAGATTTTTCTTGAAACCAAGCAAGAGCCAAAACTAGTCACAAACACCTAATCTTGGCCTTTAATTGACTATCAGGTTTGGCTTCTGCTTGGCTGGAGCAACCAGCCCCTTGCAGATAACCCCTGCCCTGGGATGAATATGAAACATCTTCAAAACATCTTTAAGTCCAGTCACGTGGACCACTCAACATTCACAAGTCCCTTAATGTCTAGCATAATACACCAGTAACTCTTCTCTTGGTAGTTTCTATATTGTACCACTCCTTTCTTAGAACTGTTGATCAGCAGCACAGGATATGGTTTAGAGCGCTGTCCCCAATGCAAATTCTGCAGTAACCCTGCACATTTTTCAAATTGACAGCTTTCCGTGTTATGACACATCAAAGTCATTGGCTAATGAGCTAATGATTAAGCTTTTGAGTAGAAGGAGATGAGTTAGCAGAAGGGTGAGTGCAAAGACTCTGAAGCAAAATAGAAAAACTGGTTTTACAGGCACCGTGGACATGCCTTTATAACTGTTGTCACCTTATTTTTGAATGTACAGTTTTAGTATGTATCATTATTCAGAAAGAGCCCACAGGGAATTTACACAGTTGGTAAACCCTGTAttatacactaatatacactatattaacaaaagtatgtggacatctgaccatcacacccatatgtgcttgttggaAATCCCATTCCAAggccatgggcattaatatgtaGTTGGTCCACCCTTTTGTTTGGGATTTGTGCCAATTCATCCACAAGAGCTTTTAGTGAGGTTAGGGGCTGaagttgggtgaggaggcctggtgcacaaTCGGCATTCCAGTtaagttgaggtcagggctctctggaggccacttgacttgacttcttccaatccatgtctttatggaccttgctttgcgcacaggggcactgtcatgctggaacaggtttaggttCAGCCacatagttccagtgaaaggaatacagcatacaaagactttcaAGACAATTAAATAAGAatgatacactatatagccaaaagtttgtggacagctgaccatcacacccatatgtgggccttccccaatctgttgccacaaagctggaagcacgcAACTGTTTGTTTACATACAAAGACTGGATTTCTTTGTTTGCTGCAGCATTACACTTTCCCTTCCCTGGAagtaagaggcccaaacatgttccagaatgacagtgcccctgtgcacaaagcaagctccatgaacaTATGGTTCaccaaggttggtgtagaaggTTGGTGTAGAGTGggctgcacagaaccctgatcTCCACCCTAAATGAACcccactaatgctcttgtggcttaatgggcaaatccccaaaatctagtggaaagccttcccagaagagtggaggctgtcataacagcaaagaggggaccaTCTCACTTTTattgcccatggttttggaataggatgttcaacaagcacatatgattgtgatggtcaggtgaccacagacttttggccatatagtgcataactaattatatagtataatgCGTGCTGATATGCCAGTTTTCACATTCCCATTCATCTAAAAGGAAGTGTATAGTTTATGCTATTTATATACATTCATTTAAAGGTTCATTTTGCATATTTCTACAATATGTTAATTTTATGCTTATGTAATGTGTATTTTGCTTGCTGAACTTATTATTAGAACTTAAAGTATTCGTCAAATGACAGTCCTTTATTGTTTTCACTACTTTTTCAACTACTGGCTGTCTTTATGTTCTAAATAGTTGTGTTACTAAAGGCAGCTAAATGTTCTGTAAGGCAGAATACTGATGCCTGTGACTTACTGAATGAGATGAGTGAATGCCCATGCTAAATTAGAATGTATTTGCCAATAATGAAAGCTGATATGCTTTAGATATTTATCTTTActctaattacatttaaatcttTACTCCAGTTAAATGGAATATTTTTATAATCCACCCCAAAGAGAGAGTTATACACTGTCACCATTCTTTAGACTGTCCTACTCCTGCATTGGAGACATTTCAACTGTTCATTGACTTTGTCTGTATGAAATGTGATGCTATGTTGATGGTACATAATATTTTCCTAAATGAACTCTAGATGTTATGTAACAAGCAACTGTATGTACTAAGAGCTGCCAGTGTTCTTTAAGCACaatgttattattaaacaaCCCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA upstream 279030 25562402 ~ 25565205 (+) False golga4
TU62042 lncRNA upstream 360044 25483803 ~ 25484191 (+) True G52483
TU62001 lncRNA upstream 463460 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 550964 25293033 ~ 25293271 (+) True G52406
TU61883 lncRNA upstream 555648 25266913 ~ 25288587 (+) False LOC113542024
TU62264 lncRNA downstream 3841 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA downstream 4956 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA downstream 4956 25851855 ~ 25864241 (+) True bcl2l11
TU62296 lncRNA downstream 41652 25888551 ~ 25888782 (+) True G52683
TU62521 lncRNA downstream 374414 26221313 ~ 26221544 (+) True G52873
XM_026939445.2 mRNA upstream 98345 25730463 ~ 25745890 (+) True tmem87b
XM_026939444.2 mRNA upstream 98345 25730464 ~ 25745890 (+) False tmem87b
XM_026939169.2 mRNA upstream 118965 25697860 ~ 25725270 (+) False LOC113541966
XM_034302624.1 mRNA upstream 118965 25699160 ~ 25725270 (+) True LOC113541966
XM_026939168.2 mRNA upstream 118965 25699160 ~ 25725270 (+) False LOC113541966
XM_034303014.1 mRNA downstream 3701 25850600 ~ 25864346 (+) False bcl2l11
XM_034303013.1 mRNA downstream 4950 25851849 ~ 25864346 (+) False bcl2l11
XM_026939464.2 mRNA downstream 135700 25982599 ~ 25987144 (+) True vip
XM_026939419.2 mRNA downstream 169721 26016620 ~ 26063912 (+) True slc29a1a
XM_026939418.2 mRNA downstream 188819 26035718 ~ 26063912 (+) False slc29a1a
TU61306 other upstream 1786348 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2038740 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2146941 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2388686 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2729196 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1139079 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1351010 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1351010 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1351010 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2600478 28447377 ~ 28448311 (+) True G53692

Expression Profile