RNA id: TU62264


Basic Information

Item Value
RNA id TU62264
length 2496
lncRNA type sense_over
GC content 0.42
exon number 3
gene id bcl2l11
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25850600 ~ 25864346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcctccTGCTCTCAGGACAACTCGGAACTTGGTGTTCTACTGAGCTGCCTCCAATCAGAGAACATCTAAATGCAACTTCTTTTCTTCTCgcttctgttttcttttgtaaaCGCTGGATTGCTGTTGTCGCATGCTCTCTGCTCGTCGTCTTCTTGGtcgccgccgccgccgctgctttttcttctctccttgATCTTCTAAGCCGTATGCTCCAGCACCATGTCCAGAATTATGGCCTGCTCTCCATAACCACTATCCACCCCACGGAGCGGCATCTGCGGGGGACATGCAACCGGAGTCGTACGTTGCGCAAGAGTTGCGGCGCATCGGCGATGAATTTAACCAGCTTTATTTTCATGAGGCAGAAAGAAATGGTGGCGCAGCCCCTCAGCAGGCCCAGAACGAGCCCGCCATCATGTTGTGGGTGGGGCTCCTGATTGGACGGCTATTACAGTTCCTCCTGAGACAAAGATGATGGACACACAGAACACCCAGCAGACAAGTAGCACCTGAATGTAGATATGTAAATACACAACATCAGAAACtgtgcttgctctctctctctctctctctctctctctctctctctgcctctatCTCACTATGAGAGTATCTGTTCCTCTTTCAACTGCACGCTGACGTCGACATTCCCTGTCCGGAGAGGAATTTGGATCTGGATGCCTGGAATTGGGTGGGAAATTCTGGGATGTAACCTGGAGTCATAGACAGCTATGTTTCCTGCATAAATATGGAAAGCTGAGCCATTAAAACACTGGGTCAAGAaggcctctgtctgtctctggaGTTTTTCCGTTTTTCGCCAAGCGAAGACGTGTTGAAAACGTGCCTTCGTGGCCTCAGTGCTCTAATCTTTCCCTTTCAGTgcctgtttgctgttttttttttttttttggttattttaattttaactatGTATTCCTTTAATAACTTGCCTGTGTTCTGTATTTATTTGCCACTGTTGTATTTAAGttgtgttttgtattgtttttaatgGAAGTGGATTAGTTAGCGGTAATGTTGCAGTTCTGCCTGCCCTTCTTTATTAACTCAAAATTTGCACTTCTGTTCGAATAGTCTACACATAATAGTTACACAGAATTATTTGATTAATCATGTATTGCCTGAAGATCTTGGTGGAAACAAGGAAATCTCCAACCGGTTGTGAACAGCTTATGAGAGCTACAGAAACACACCAGGCCAGACATTCAGCGACTTGTTAATTTCGCCTTTTGGCTTTTCAGAAACCTGAGGGACAGCCAACCCGTAGTACACGTGCGATTTTCACACTGTTATTTGCCAGAGAAACGTCAGCCTTGGCTTCATGCCCTTTCATGTTTTGAGGCCAAGTGATTTAATACTGACGAAATACAACACAAACCCTCACAAGGCcgtctttttttgcttttgtgaaaatgaatgaaagtgaGCGACTGGAATTTCTAAGGACAGACGAGACACACCGGTTTCCACGTTAAAGTGATTTggatgaaattttatttttaacagatgattttaattgttttaaatttggCCCATGGTGTAATTTCATGAGTGAAAGGTTTAATAATACACGTGCGGTTGGTCAGCTGTGGTTGTATTGGGCATTTCATCGTGGGTGGTGGTGTCCACTTTTAATTGCGTGTGTGAGATTAAAGCTATTCAGGGGATTTTCAAGTGAGGTTTTGTTTCTTGCTGACTTTTGACCAAGAACAGCCTTAATCGCCGAGTCTGGATTCAAGAAAAGTGATGTAATGGTGTTATAAAAATAGCTTCAGTGACTCAGGGGATTTATACCTGTGGAGTTTTAAACAAAATGGGCTTTCTTCATGATCCAGTCCATGGCTCTACCCTAACCTTTTTTATGCATTGCCATTTTCCCAGTATTGCATTTAGCATTCCAAAAGATGGGTCATATTCTACACTTACATTCTTGGCACTTAACAACTAATATGTTAACTGTGTTAGATATGTTAACTGATGACAAATGACACCCAGAGGAATTGGCAGATATTAAAGACACCCACAATCCACTTGTTAAAATGCAATTATGGGCATCGTTTCTGtcacattttcatcatttctttcATTCAAAATTGAATTTCTTGTCAAAATGacaacaagctttttttttttagcttgccTTGATCGTTTCAGGTTTACCACTCAAACCAAAGAACGTGTTTCAACgtactgtatgtaaatgttgACATTTGCATTGTGTTCTTCAATATTTATGCATTACGTATGCACAATCATATGAAGATTGGTATAGAATCAAACTCCCGGTATTGGAAATGTCATAGATTTCAtgtccctttttttcccccaggacAAACGTTTTCACAGAAGATAAACTTCAAGCCGATCTGCATTCCAgttcactggatttttttcatAGATTCAGTCGCATTACCTGCAAATTAACTGATCCACCTCGCAGACCCAGTACGTTTGtagcaaaacatttttctttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62246 lncRNA upstream 3841 25844235 ~ 25846899 (+) False acoxl
TU62058 lncRNA upstream 285535 25562402 ~ 25565205 (+) False golga4
TU62042 lncRNA upstream 366549 25483803 ~ 25484191 (+) True G52483
TU62001 lncRNA upstream 469965 25378353 ~ 25380775 (+) True G52456
TU61941 lncRNA upstream 557469 25293033 ~ 25293271 (+) True G52406
TU62296 lncRNA downstream 24310 25888551 ~ 25888782 (+) True G52683
TU62521 lncRNA downstream 357072 26221313 ~ 26221544 (+) True G52873
TU62506 lncRNA downstream 392401 26256642 ~ 26344302 (+) True G52858
TU62532 lncRNA downstream 499198 26363439 ~ 26363733 (+) True G52884
TU62533 lncRNA downstream 501951 26366192 ~ 26369260 (+) True G52885
XM_034303061.1 mRNA upstream 3837 25801972 ~ 25846903 (+) True acoxl
XM_026939445.2 mRNA upstream 104850 25730463 ~ 25745890 (+) True tmem87b
XM_026939444.2 mRNA upstream 104850 25730464 ~ 25745890 (+) False tmem87b
XM_026939168.2 mRNA upstream 125470 25699160 ~ 25725270 (+) False LOC113541966
XM_026939464.2 mRNA downstream 118358 25982599 ~ 25987144 (+) True vip
XM_026939419.2 mRNA downstream 152379 26016620 ~ 26063912 (+) True slc29a1a
XM_026939418.2 mRNA downstream 171477 26035718 ~ 26063912 (+) False slc29a1a
XM_034303055.1 mRNA downstream 172280 26036521 ~ 26063912 (+) False slc29a1a
XM_026939416.2 mRNA downstream 185669 26049910 ~ 26063912 (+) False slc29a1a
TU61306 other upstream 1792853 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2045245 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2153446 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2395191 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2735701 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1121737 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1333668 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1333668 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1333668 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2583136 28447377 ~ 28448311 (+) True G53692

Expression Profile