RNA id: TU62296


Basic Information

Item Value
RNA id TU62296
length 232
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G52683
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25888551 ~ 25888782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttatgcatgaaagggttaagaATGCATTTTTTGTTCCTATTTATAAGCACAaaatcaaaagacattatgtttgtaaatttgaagtggctCTATACagtatgcactggaagtatgtatattaaaaaaaacaaaaactaaagtgtctgaatacttatttccctcacTGCACAATGTAGTTTTGCAAGCCAGACTTCTGTATGTATGTTAAGGAAAAGAAATCTGCTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62264 lncRNA upstream 24310 25850740 ~ 25864241 (+) False bcl2l11
TU62263 lncRNA upstream 24310 25851855 ~ 25864241 (+) False bcl2l11
TU62265 lncRNA upstream 24310 25851855 ~ 25864241 (+) True bcl2l11
TU62246 lncRNA upstream 41652 25844235 ~ 25846899 (+) False acoxl
TU62058 lncRNA upstream 323346 25562402 ~ 25565205 (+) False golga4
TU62521 lncRNA downstream 332531 26221313 ~ 26221544 (+) True G52873
TU62506 lncRNA downstream 367860 26256642 ~ 26344302 (+) True G52858
TU62532 lncRNA downstream 474657 26363439 ~ 26363733 (+) True G52884
TU62533 lncRNA downstream 477410 26366192 ~ 26369260 (+) True G52885
TU62740 lncRNA downstream 639625 26528407 ~ 26533502 (+) True G53080
XM_034303014.1 mRNA upstream 24205 25850600 ~ 25864346 (+) False bcl2l11
XM_034303013.1 mRNA upstream 24205 25851849 ~ 25864346 (+) False bcl2l11
XM_034303061.1 mRNA upstream 41648 25801972 ~ 25846903 (+) True acoxl
XM_026939445.2 mRNA upstream 142661 25730463 ~ 25745890 (+) True tmem87b
XM_026939444.2 mRNA upstream 142661 25730464 ~ 25745890 (+) False tmem87b
XM_026939464.2 mRNA downstream 93817 25982599 ~ 25987144 (+) True vip
XM_026939419.2 mRNA downstream 127838 26016620 ~ 26063912 (+) True slc29a1a
XM_026939418.2 mRNA downstream 146936 26035718 ~ 26063912 (+) False slc29a1a
XM_034303055.1 mRNA downstream 147739 26036521 ~ 26063912 (+) False slc29a1a
XM_026939416.2 mRNA downstream 161128 26049910 ~ 26063912 (+) False slc29a1a
TU61306 other upstream 1830664 24055241 ~ 24057887 (+) True LOC113540163
TU61214 other upstream 2083056 23793680 ~ 23805495 (+) False slc29a3
TU61166 other upstream 2191257 23697032 ~ 23697294 (+) True G51749
TU60962 other upstream 2433002 23454428 ~ 23455549 (+) True G51562
XR_003404579.1 other upstream 2773512 23114185 ~ 23115039 (+) True LOC113545030
TU63018 other downstream 1097196 26985978 ~ 26992711 (+) True G53328
XR_003404257.2 other downstream 1309127 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other downstream 1309127 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other downstream 1309127 27197909 ~ 27206370 (+) True znf451
TU63410 other downstream 2558595 28447377 ~ 28448311 (+) True G53692

Expression Profile