RNA id: TU62373


Basic Information

Item Value
RNA id TU62373
length 3608
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G52759
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25843012 ~ 25846892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgtttaataataacattGTGCTTAAAGAACACTGGCAGCTCTTAGTACATACAGTTGCTTGTTACATAACATCTAGAGTTCATTTAGGAAAATATTATGTACCATCAACATAGCATCACATTTCATACAGACAAAGTCAATGAACAGTTGAAATGTCTCCAATGCAGGAGTAGGACAGTCTAAAGAATGGTGACAGTGTATAACTCTCTCTTTGGGGTGGATTATAAAAATATTCCATTTAACTGGAGTAaagatttaaatgtaattagagTAAAGATAAATATCTAAAGCATATCAGCTTTCATTATTGGCAAATACATTCTAATTTAGCATGGGCATTCACTCATCTCATTCAGTAAGTCACAGGCATCAGTATTCTGCCTTACAGAACATTTAGCTGCCTTTAGTAACACAACTATTTAGAACATAAAGACAGCCAGTAGTTGAAAAAGTAGTGAAAACAATAAAGGACTGTCATTTGACGAATACTTTAAGTTCTAATAATAAGTTCAGCAAGCAAAATACACATTACATAAGCATAAAATTAACATATTGTAGAAATATGCAAAATGAACCTTTAAATGAATGTATATAAATAGCATAAACTATACACTTCCTTTTAGATGAATGGGAATGTGAAAACTGGCATATCAGCACGcattatactatataattagttatgcactatatggccaaaagtctgtggtcacctgaccatcacaatcatatgtgcttgttgaacatcctattccaaaaccatgggcaatAAAAGTGAGAtggtcccctctttgctgttatgacagcctccactcttctgggaaggctttccactagattttggggatttgcccattaagccacaagagcattagtgggGTTCATTTAGGGTGGAgatcagggttctgtgcagccCACTCTACACCAAccttctacaccaaccttggtGAACCATAtgttcatggagcttgctttgtgcacaggggcactgtcattctggaacatgtttgggcctcttactTCCAGGGAAGGGAAAGTGTAATGCTGCAGCAAACAAAGAAATCCAGTCTTTGTATGTAAACAAACAGTTgcgtgcttccagctttgtggcaacagattggggaaggcccacatatgggtgtgatggtcagctgtccacaaacttttggctatatagtgtatcatTCTTATTTAATTGTCTtgaaagtctttgtatgctgtattcctttcactggaactatgtGGCTGaacctaaacctgttccagcatgacagtgcccctgtgcgcaaagcaaggtccataaagacatggattggaagaagtcaagtcaagtggcctccagagagccctgacctcaacttaACTGGAATGCCGAttgtgcaccaggcctcctcacccaacttCAGCCCCTAACCTCACTAAAAGCTCTTGTGGATGAATTGGCACAAATCCCAAACAAAAGGGTGGACCAACtacatattaatgcccatggccTTGGAATGGGATTtccaacaagcacatatgggtgtgatggtcagatgtccacatacttttgttaatatagtgtatattagtgtataaTACAGGGTTTACCAACTGTGTAAATTCCCTGTGGGCTCTTTCTGAATAATGATACATACTAAAACTGTACATTCAAAAATAAGGTGACAACAGTTATAAAGGCATGTCCACGGTGCCTGTAAAACCAGTTTTTCTATTTTGCTTCAGAGTCTTTGCACTCACCCTTCTGCTAACTCATCTCCTTCTACTCAAAAGCTTAATCATTAGCTCATTAGCCAATGACTTTGATGTGTCATAACACGGAAAGCTGTCAATTTGAAAAATGTGCAGGGTTACTGCAGAATTTGCATTGGGGACAGCGCTCTAAACCATATCCTGTGCTGCTGATCAACAGTTCTAAGAAAGGAGTGGTACAATATAGAAACTACCAAGAGAAGAGTTACTGGTGTATTATGCTAGACATTAAGGGACTTGTGAATGTTGAGTGGTCCACGTGACTGGACTTAAAGATGTTTTGAAGATGTTTCATATTCATCCCAGGGCAGGGGTTATCTGCAAGGGGCTGGTTGCTCCAGCCAAGCAGAAGCCAAACCTGATAGTCAATTAAAGGCCAAGATTAGGTGTTTGTGACTAGTTTTGGCTCTTGCTTGGTTTCAAGAAAAATCTCCAGCCAAACAGGATGACTGtagataagattggacacccctagTCTAGTCTCCAAGACTTATGAGTACTAGACATTTTATTAAGTGTAATGTTGGAATCCATGAGAGAGAATACACACAGTACCCCCACCCTACTGTTCTGCTTGTCACCACCCATAACGAGCAATTAATGGACTTCCCAGCTCAGTTTCTCTCAGCTCATAGTAGAAACTGGCGAGACCAGACCTGCTCAGGGAGTCTACAAAGTAACTCATCACCAAACTCAAGGTTTACTAGGAAGACTACCTGGAAGAGATCCAAACAAGGATTTGGATTTGTATCAAAATACAACTGTAGAGAGGACTGGAGGGCCAGGTGTTTGGCTGCAGGGCGAATCTCTGAGCCTATGTCACACTGGACATCATGAGTTGCAATGActcattaacaacaacaaacgACGAGCTAAAGATGGCTCTCAACCAAGAGGAATGATCAGTGTGATACTAAGCATCACTCAGCTAAGTAAATCTGTTTGACACTGCAATCCCAGAGACATCCAGCGTCCTCACTGAATGATGTTAGGAATCAATGCAAGAgctatttttcttatttttttattttaaaccagtAATTCTGTATTAGAATATTAATAGTGCAAGCTTTATTTAAACCTTCCATTTTGTTTATCTTTCCAACTATAGATTTAGGTGGTATCTTCATTATTGGCATGTACATTTGAAAGTTTTTAACACGGGCTATGaataatgagaataaaaatatcaacataATATGAACCAGATAATGAACATGGAAGTTAAATAAGTGTTTACACATTAAGTGTTGCTGTGCTTCACTTTTAGGCCCATTTTTTTGTACGTTTGAATACCCTGCACTTTATATCACACAGATGATTTCAGAGTGCTATAAAACATTTGAGCCTTTATCTTAACATTgcttctatttattaaaaacaagacCAGATATAAATAGCCATCTATAATAACAGACCTTCAATAATAATGTTTGATTTATATAATAACATTGCTATTGGCAGAATAAGCAAATCATAAAGCATAGAGATTCACATCACAAAACCCAAAACCCATTTTTGAAAAGACAAATAAGGTGCTATTCTTTCTTTAATCTTTCCAAACATCCTAATGTTATCCATTGTAGGCGAAATTGAAAAACGAGTTTACAAACAGGGAGCAGTACAATTTAATCCAAGTGTTCGCAGAATGTAGGTTTTCTATACCTCAGAGCTTTGATGTGGCTCTCTGCTGGCTTTGGGGCTGGGGAATGGGGCTCTCGGGCTGTGGGTAGAAGCCCCAAGGTGCCCTGGAGTTGGGCACACCGGCGATGGGTGCCTGGATGCAACAGGGAGGCATGTTGAAGTCTGACACCACCTTCAGTGCATCGTCCTTCACTGACCTGCACAACTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62330 lncRNA downstream 104349 25736578 ~ 25738936 (-) True G52716
TU62328 lncRNA downstream 112415 25730445 ~ 25730870 (-) True G52714
TU62152 lncRNA downstream 167969 25675076 ~ 25675316 (-) True G52564
TU62139 lncRNA downstream 171295 25669966 ~ 25671990 (-) True G52555
TU62095 lncRNA downstream 248378 25594236 ~ 25594907 (-) True G52532
TU62388 lncRNA upstream 18994 25865886 ~ 25866087 (-) True G52771
TU62392 lncRNA upstream 42616 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA upstream 68570 25915462 ~ 25916951 (-) True G52792
TU62635 lncRNA upstream 269996 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 403463 26250355 ~ 26286280 (-) True G53047
XM_026939300.2 mRNA downstream 51885 25772887 ~ 25791400 (-) True lhcgr
XM_034302898.1 mRNA downstream 73239 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA downstream 73241 25750053 ~ 25770044 (-) False mertka
XM_026939162.2 mRNA downstream 145434 25685684 ~ 25697851 (-) True LOC113541965
XM_026939496.2 mRNA downstream 338529 25494676 ~ 25504756 (-) True msh6
XM_034302838.1 mRNA upstream 76138 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA upstream 76138 25923030 ~ 25966974 (-) True anapc1
XM_026939525.2 mRNA upstream 154538 26001430 ~ 26006094 (-) False LOC113542170
XM_026939524.2 mRNA upstream 154538 26001430 ~ 26004309 (-) False LOC113542170
XM_026939523.2 mRNA upstream 156247 26003139 ~ 26011780 (-) True LOC113542170
XR_004577835.1 other downstream 1107398 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1191438 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1191438 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1803185 24017264 ~ 24040100 (-) False mlh1
TU60979 other downstream 2389068 23447908 ~ 23454217 (-) True G51576
XR_003404274.1 other upstream 63126 25910018 ~ 25910119 (-) True LOC113542183
TU63465 other upstream 1690884 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2586328 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3355040 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3832519 29679411 ~ 29681726 (-) True LOC113541988

Expression Profile