RNA id: TU62409


Basic Information

Item Value
RNA id TU62409
length 1412
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G52792
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25915462 ~ 25916951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaacaagcattgcGGTTAGTTAaggtttttttcctttcattttttaagtGTACACTGGTCTTTTGCGGACATGACAGCTGACAAATTTGTTAACACTCATGTTGAGATGAATAGGAATagcctttttgtttgtttgtttgtttttaaagagaaactaCAATACAAACTATTGTATCTAGCTGGTATCTAGAGGGTTAAAGTTATAGGTTGTTGCATTGTCATTATAATTGTGTCCACAAGGTGGCAgcatacacaacacaaacagaCGCCGAATAGGGCTTCATAGTTCTAGCTTTTAGGATTTTAAGAGAGCTTTTATAGACGTGTAACGTGTGAATTTGAAACTATCAAGTCTatcaaaatgtacatttattattttagacttgCATAGTGAAAAAAGTGCAAAGATCAGTGAGTTAAACCAGACCAGTGAGAAGATGTTTCAGCCCATAGCTTTCTTCAGTGCTCACCTAACAAACAACAGTTCATCTCTTTCACAAACATATAACTGAAGATTGACACCTGAGCTTAATCAAAAGGAAATCCTGAAGTTACAGAGCTCAGTTCCAGAAAATATAGTATGGAAatacaccacaaaaaaaaaacacaaaatctaCACCACAAacttacaaaaaacaaacaaacaaaaaagatcaACATGAACAATCCATCTCTTCATTCAAGCTATTAGAAGTTAAAGAGTTTAGCTCAAAAATCCAAACCCCCCTCCAATGAGGAAGGACCCTCTCAATGCCCAAACACTTAACAGATCAGTGAAAGTCTGCTGCCTTATACGCCTAAACCCTTGAGTGCCATCTCATTTTCAAAATTACTGCGAATATTGTGGTATGCTAATATTGTGCTTAGCTGTCACCCAGCCTAACGTAAAATTTTAAAGATGGCAGTTTGCAGGTTTCTCAGAATTTAACCAGCATGTTAAAATCAGTTGCATGACCAGCAGGGAGAAAGGTCAAAATTTTGGCTTTGCCTCTTGACCTTAATTATATCATTAATCTATTTTTTGCTATGTAATTgcaacaaatacataaaaaagcCTTTGATTAGTCACAGCAGAAGCAACCTGTGAAAAGATGAGTTAACCTGCCTTTCAAGGCACCGAGATCTAGTTTTGAACATATGTCATCACAACAGTGTTTTGTATCTACAGTGTCCAGTCATTTTGTTGTCACTCATGCAGGCACAAAGGTTGTCTCTTAAGCTCCTGTAAACCTGCTTAGTCATTCCATCGTAACAGCCTGCAGCAAATGAACCCTGGACTTACTGATCAATGTGCCCTATGAGGATGACACTTCGCTGTGACCTCTATGTGGGAAAAGTGTAAGTCATTGTAGTGGCATTTAATGAATATTGATAGTCCTTAGAGGTGCTCTGTAGCAGAGAGAGACTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62388 lncRNA downstream 49375 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 68570 25843285 ~ 25846892 (-) True G52759
TU62375 lncRNA downstream 69349 25843012 ~ 25846113 (-) False G52759
TU62330 lncRNA downstream 176526 25736578 ~ 25738936 (-) True G52716
TU62328 lncRNA downstream 184592 25730445 ~ 25730870 (-) True G52714
TU62635 lncRNA upstream 199937 26116888 ~ 26117206 (-) True G52981
TU62707 lncRNA upstream 333404 26250355 ~ 26286280 (-) True G53047
TU62704 lncRNA upstream 336394 26253345 ~ 26288933 (-) True G53046
TU62709 lncRNA upstream 341479 26258430 ~ 26262823 (-) True G53049
TU62708 lncRNA upstream 356965 26273916 ~ 26276092 (-) True G53048
XM_026939300.2 mRNA downstream 124062 25772887 ~ 25791400 (-) True lhcgr
XM_034302898.1 mRNA downstream 145416 25750053 ~ 25770046 (-) True mertka
XM_034302899.1 mRNA downstream 145418 25750053 ~ 25770044 (-) False mertka
XM_026939162.2 mRNA downstream 217611 25685684 ~ 25697851 (-) True LOC113541965
XM_026939496.2 mRNA downstream 410706 25494676 ~ 25504756 (-) True msh6
XM_034302838.1 mRNA upstream 6079 25923030 ~ 25966974 (-) False anapc1
XM_026939278.2 mRNA upstream 6079 25923030 ~ 25966974 (-) True anapc1
XM_026939525.2 mRNA upstream 84479 26001430 ~ 26006094 (-) False LOC113542170
XM_026939524.2 mRNA upstream 84479 26001430 ~ 26004309 (-) False LOC113542170
XM_026939523.2 mRNA upstream 86188 26003139 ~ 26011780 (-) True LOC113542170
XR_003404274.1 other downstream 5343 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1179575 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1263615 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1263615 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 1875362 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1620825 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2516269 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 3284981 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3762460 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 4194880 30111831 ~ 30122655 (-) True G55209

Expression Profile