RNA id: TU62709


Basic Information

Item Value
RNA id TU62709
length 4353
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G53049
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26258430 ~ 26262823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttgacttctcCTGCTTTCTATCCCTTATATGATAAATGTCAAAGCAGACCACACCGGCTTATTACTTTATATATGCACTCTTTTAGCTGAACCTGATTCAAAACACGTCTCTCTTCAGGTAAATAACACAGACCAGACAGGTGGTTTCCATATTGGACAAGTCTGGCTGACGGGCGCCTCTCGGCCAAGCTacctgagagaaaaagagtaagagaaagaagaaaagaacaccGGAGCAATGCCAGGAATGTGTCTGAGCTGACACTGCACAGAGCTCTACTACAAGTCTAAAAAGCTTGGTGACAATTGCATGACAAGCAACCCCACTGAAATGCTCTTCTATCAACAGACCCACCACGCTTTGAGGTGAAAAAAGTGAAGGGTTTGTGACAAAGACAACACAAAATACCTCACGGATAATAACCAGAGAGCTGTTCTGCTCTGACTGAATATAGTGCAGacgaaaaagaaaggaaaatggaaaatatactgtataacaattTAGATTATGCACAGACatgttattcattttgtttatccACAGGAGTGTAACAGTTTTTCTGTAATATCCCAACATGGAATGACGCTGAGATAAGACACTGTGCAGCACTCCTAGAGCAGTTGAGGGTTTGAGGCCTTGCTTAAGGCatttctgggatttgaacttccTCCCAACCTTTCAGTCACAAGGAACCACTGAGATACCCCTGGCCCAACACTAATACCTTTTCAAATGACATTCTGAACACCAGTGCTGAGTGAAAGCCTCACGCGGATTTTCAGATACTCACGCATCTGTTCGGTGTCTGCCCCGACATCATCCGATCGCTCAGCGTCGTCCTGATCGTCACCGGATGAGATGGTATCTGCAAGAGCACCGGCAAAACTGTAACCTTTCTGCTTTTACTCGGTCTTTTGAAGCTCTACATGCATGCAATACTACTACAGCTACTTTACAAATCAAGGAACAATTTGGGAATGTAAGCATTAGCATGGTTGTTACTACTAACCAACTACTACTGCAAAAGCTACTTGAATTTCAAAAAAAGGTGTTTGAATGCTATTTATATTACCCATTCAATGTTTAGTCTAGAGAGGAAAGCCCAGAAATTGTTTCAACAGCATAGCTAAAGACAAACAGTAATGCTAGCATTCCCCATTTTAAACGTACCAATCCACCCTTTTAGTACTACAACACTCGCACCCAGCAACATCCAACACAACGACATCACAACTCCGAAAACAAGACAGTGGCTAAAGCCAGCTTTTCAAACAACGCATGTTTTACGTAAGTTTGAAGATTTTGAGGACAAAATCTTGACACTTCAGTGACACTAACTGGGGGTTTGGACCAGCCAaaagataaacacacacgcTCAGCTGAACCCTACAAAAATCAAGTCGccattgttaaataatatttccCGAATCGGGCTCGTAGGTGGGCGGTTAGAGTTCTCTTTCGGTCGTGGCGTCTCACCTGTGACATTAACAATGAAGCAAACCGCATCAGTGGCCTTAGCGCCAGTGGCCTGGCATGCGTACAGGCCCGAGTCAGTCGGTGCAGCATGGCGGATGTGCAGCTGCTCGCGCTCAATGAGCGTACGGTTGTCCGGAATAAGCGAGGTGCCGTCTTTGGTCCACACGATGGCAGCTGCCTCGGGCAGCGGGCAGTTCAGCTTCACAATGTCTCCTGGGTGCACCGAGCACACGGTGGCCTTTGAGCTCTCGGAATTGATGGGAGGCTCTGCAGAGCAAGGGTAGGGAAGGGACGAGCGAGAGAAAAGAAAGCGGTGAGACAGGGTGcataggaaaaaagaaagtccgggtgagagaagagagaaaacaagcgaaagcatgagaaaaaaaaaagagagaacaccATAATGACCCAGCAAAGGCTCTGAAATGACTTGTGTGAAAGACAGAAGCAAAAAAGCAAACCCATCAAGGCACCAATAAATGGGATCTGTTACCCAAGTACAGGACTCTGAGGCTGCAACTAACTAATATTTGATAATCAATTAACTAAATACTGCTTTTATTACAGGAGAGTCTCAAAAGCGGTACCTTTTGCTCTGCCAAAGAATTTCCTACATCCAGCATCCTACATCCATCCTACATCCAGCAGCAAAAAGAAACTCACTGGCCTTATCTTtgcaaatttatatatatatatatacattttgccTGATGGTCTTATCCGAAAATGATCTTGGCATTCCAAAGTAAAGCTTCTGAATAGAGTATTCGAGCTTTTTATGTATGCGTGCTAGACTGCGCTATTCAGGAGGTCCTGTTAGATCTTCTATGCTTCAAgtgtacatatactgtacacttcATAATCCATAAGACTTTAATTGTGTAGCATCGTCTGTCTGTATGAAACATTTTCCTTTACTTAAAGAAATGACTGTTCTTGGCATGCAatcaagaaagaaaggaaaatactCATTCATTTCCAGAAAAGTTTATATCTATGACAGTAATTGTTGCAGCCCTATACTGAGTAAATCACAATCTTATTTCACTTGCATTTAACTACAACCACAGAGGAATTTTTTAAGCATGGAGTCATATATAAAGAGAAAGATTATGCGATAAGCAGTGCACTTGCACGAATGATTTGAGAGAAATCATTCCATATTTATTCCACTACAATTACAAATGtccttgcttttctttttttttttccctgtcaaTTCTACTCGGGCCCCAAATTAAGTCCACAATACTGCTTATTCATTTGACCAATTATGTGCAATTTATGCTTGTAGAGTCTATCCCAAAACCATGGAACTACAGGAAATCAGATTCTCCTCCACCATCTGTTATTCATTTCCAGGCTGCATAAGACAAACATAAAACGTAATAACAGCTTATAACAGTTCTGCTATCCATCACAGTTGTTAATGACGCATTAAACAATGCAGCATTCAAGCAATGCAGGATTGCCATTTGCTCCATTCACAGACGCAAGCAAAGTCAAAGGGAAATGAAAGCGATCGCAGAAACGGTAAGTTATATATAGgataaagacaaaaacacactctCATGTTCCTATTTTGACACTATTCTGTGTTACACTCCTTCACGCATACGCAATTCTAGCTAGGCTGAAAGCTTAAGTCTGAGTTGAGTATTGAGTATTAGACTTCAGTACTGCACTCATCTCCCAAGTGTTTGGAGAGATGTTTAAAAGATATGAGAAGAAATCGCACAAATATATGTGCTTTGCGATCAGTTAACACATAGTTAAGATGCTTAAAATGCGCAGGACACACGTGCATCAGTTTGGTtgttttaattagatttaattagaATTATAATAAGAAAAACTGTTCTTTATTGTAGAAAAAGCTCAGAGCCACTAAATGTATTTCTCAACGAGGTGTTAAACCTGCAGCAACGATAAAGGCAGCAGTACTGGAGAAAAAGCATGGTCGAACTTGCCATGTTTTTAGATGATGAGAGGAGGCAATAATTAAAGGTGTAGCGGCACTCCCCGGCTTTCCTGCACACCTCTCCTGCAGCACATTCCTGTGCTATTATGTGAGCCATAACTGCCTTCTTAGAAAAGGGGAAAGCCAGATCACTTCACACACGGGACTGAAGGGGGCCCGGGAGTGTGCGTGACGATCTAAACCTTCCAGGCACATTGCCCCACACAGGTACAGTTGCtttattgttacttttttttGCCCCTCCCTCCCCCCTTTCCCTTGCTTTCCTTCATTCCGGAAATAATTAAGTCCTTTTTTAAGTCGCTGTTTAAACTGCATGGTCATGTGGCAGGTGATTGATGGGAACTGTATTCACCGCCTTATGTTTCCGGAGGCCTGTGTTTGGCAAGTGGTTAGTTAACTGTTATTCGCTGTGTGCTTCCTTCTATTGTGCGATCAAAGGCTAATCGGAAAAAGAGTGTGGTGCAGATACACGTCGTCTGTTCCAACCTGAGACTCATTATCCTGGCGCACGATAGTCTAGTAGTAGTGAGCCACGCTTTGTGGCATAATCTTGAAGACATTTAGCCATGAAGTCTTTCAGGTGAGAGGTGGAACCTCTTCCACAAGCCCTGTCACGCCGACTTACTACGAGACCATTCGAATACCGGGACGGCTGAAAAACATCATAGATGCGCATCTTATTGCAAGTCGAGCTTAAAAATAGTAAGATGTCAGTTGCTGAGTGTCTAGTAAGAAAAGGGAGGTATGAGCAGTGGGCGAGTGATGCCTGAGCATTTACAGGCGCATGCAACTGAAAGGGAAAGGcagaaaacaggcaaaaaaGCAATACAGATGAGACGAGCTCTCCAAAGTGGTCAGAATATTTGCGAACACTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62635 lncRNA downstream 141224 26116888 ~ 26117206 (-) True G52981
TU62392 lncRNA downstream 337366 25889508 ~ 25921064 (-) True G52775
TU62409 lncRNA downstream 341479 25915462 ~ 25916951 (-) True G52792
TU62388 lncRNA downstream 392343 25865886 ~ 25866087 (-) True G52771
TU62373 lncRNA downstream 411538 25843285 ~ 25846892 (-) True G52759
TU62708 lncRNA upstream 11093 26273916 ~ 26276092 (-) True G53048
TU62711 lncRNA upstream 24101 26286924 ~ 26355796 (-) True G53051
TU62725 lncRNA upstream 102315 26365138 ~ 26365358 (-) True G53065
XR_003404245.1 lncRNA upstream 242944 26505767 ~ 26506244 (-) True LOC113542010
TU62841 lncRNA upstream 264446 26527269 ~ 26528340 (-) True G53175
XM_034302953.1 mRNA downstream 148021 26076592 ~ 26110409 (-) True tmem63ba
XM_026939067.2 mRNA downstream 184676 26066974 ~ 26073754 (-) True LOC113541884
XM_034301629.1 mRNA downstream 186441 26066974 ~ 26071989 (-) False LOC113541884
XM_026939523.2 mRNA downstream 246650 26003139 ~ 26011780 (-) True LOC113542170
XM_026939524.2 mRNA downstream 254121 26001430 ~ 26004309 (-) False LOC113542170
XM_034302699.1 mRNA upstream 87306 26350129 ~ 26351151 (-) True LOC117596837
XM_026939275.2 mRNA upstream 103355 26366178 ~ 26467381 (-) True wdr11
XM_026939066.2 mRNA upstream 266183 26529006 ~ 26620986 (-) True plpp4
XM_026939462.1 mRNA upstream 366427 26629250 ~ 26629878 (-) True lhb
XM_026939344.2 mRNA upstream 376726 26639549 ~ 26667669 (-) True arfgef3
XR_003404274.1 other downstream 348311 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 1522543 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 1606583 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 1606583 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 2218330 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 1274953 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 2170397 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2939109 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 3416588 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 3849008 30111831 ~ 30122655 (-) True G55209

Expression Profile