RNA id: XM_026939540.2


Basic Information

Item Value
RNA id XM_026939540.2
length 5978
RNA type mRNA
GC content 0.45
exon number 22
gene id pde10a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28201035 ~ 28301823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGTTTGACTTCTACTTATGGCTCCGTGTAATCGCGCTCATATGGGTGTGGCGAGCAGGAATGTGCTTTTATGGCCACCTTGTGTTAATTCATTCACCGGAGCGGTGTCGGTCAGTAGAATGCCTCCATTATAATGCCTGCATATCGCTTTGATCGTGCTGTGGGCGATTTCCGTTCAGCAGAGAGCAGTGCAAACCGGCAGCAGAGCCCAGAGGAGAGAAAACGCAAGAAATGAGGGGACACTCGggggttattttattttagtttttcatttgGCGCAGAGCATGAAATGTGTCCGAGCTGTTCTCGCGTTTATTCCGAGctcctatatatataaaaaaaacccgTCCAACCCAGTGAAATTACTCCCATCACGCCCCCAATAGCCCCCGACTCCAGggaaaacaccacacacacacacacacacacacacatacatgcacgcacacacgcacacgcgcgcagACAAGTTTTGCGTCTCCGCCAGTGTGTCCGCTCACGGCGTGCGACTAACAGCTCCTTTCTAACGctctgctatttatttatttttccgcGCGCGGACACACAGGAAGCGAGGAGGAGCTGAAGAGCTCGCTGTTGTGCATCAGCGGGAGTTTTGTGCTCGTGCGAGGAACAGGAGGACGCGGAGACACGAGGTATCGCTCGCTCCCTCGCTCGCGCGCGCTTCGCCGTTTCCGGCATTCCCCCCCTTCACTAGCAGCCGGCTCGGACTGCGGTACCCGGATTGTCCGCTTCCTTCTCCGTTTGGCTTGATGAGCCGCCGGACTCTGCCTTCAGCAAGACTTTTGAGTACAGCAgttttttctcctctcctcctcctcctcctcctcctcatcctcctctcccGTTCAGTCGCGCTTTCCAGTCCGACATGGAAGATGGGCCGCCTTCGACAAGCTGCTTCAGAAGGCTCGCGGACTGTTTTCTCGGCTCAAGTCTGACGGATGAGAAAGTGAAGGCGTACCTTTCCCTGCACCCGCAGATGCTGGATGAGTTTGTGCTGGAGAGCGTGAGCGCGGAGACGGTGGACAGATGGCTGAAGCGCAAGAGCAGCAGCCCTCCTACAGATGAGCCTTCAACTAAAGAAGTAAGCAGGTACCAGGACACTAATATGCAGGGCGTGGTTTACGAGCTCAACAGCTACATGGAGCAGCGGCTGGACACAGGCGGAGACAACAAACTCCTGCTGTACGAATTGTGCAACATCATCAAAACAGccACAAAAGCTGATGGCTTTGCACTATACTTCCTTGGAGAATGCAACAATACCCTGTGTTTATTCACGCCAACAGGGGCAAAGGAGGGGCTTCCTGGGCTCATCCCCTCCGGTCCCATTGCGTTCGGTACCACCATAGCTGCTCACGTTGCCAAGACACGCAAGACACTACTTGTAGAAGACATCATGGGGgACGAGCGGTTCCCCCATGGCACAGGGCAGGACTCAGGGATCCATGTTCACTCTGTTCTGTGTCTCCCCATCCTCACGGCCATCGGAGACCTGATCGCTGTGCTGGAGCTGCACCGCCACCTGGGCCGAGAGCCCTTCAACCTCAGCCACCAGGAGGTTGCCACTGCAAATTTGGCATGGGCTTCTGTAGCTATTCACCAAGTGCAGGTCTGCAGAGGTTTGGCAAAGCAGACAGAGCTCAACGACTTCCTCCTAGATGTGTCAAAAACGTACTTCGACAACATTGTGGCAATAGATTCTCTACTTGAACATATCATGATATATGCAAAAAACCTGGTGAATGCAGACAGATGCGCCCTCTTCCAGGTCGATCACAATAACAAAGAGCTGTACTCTGACCTCTTTGACATCGGGGAGGAGAATGAAGGGAAGCCGGTATTtaagaaaaccaaagaaattaGGTTTTCTATAGAGAAGGGTATAGCAGGTCAGGTGGCACGAACAGGAGAGGTCTTGAATATTCCAGATGCCTATGCAGACCCACGGTTCAACAGAGAAGTGGACCTGTATACGGGCTACACGACACGGAACATCCTGTGCATGCCCATCGTCAGCCGGGGAACCGTAATAGGCGTCGTACAGATGGTGAACAAGCTGAACGGAAGTGCCTTCACTAAAACTGATGAGAACAACTTTAAGATGTTTGCTGTCTTTTGTGCTCTGGCCTTACACTGTGCAAATatgtatcACCGGATCAGACATTCGGAGTGCATCTACAGGGTGACTATGGAGAAACTTTCATACCACAGCATCTGCACATCTGAAGAGTGGAAGACCCTCACACAGCTCTCCCTTCCTACCCCCATTTACAAAGAGATTGAACTGTTCCACTTTGACATTAGCCCCTATGAGGAACTCTGGCCTGCAGTCTTTGTGTATATGATTCACAGTTCATGTGGGAAAAACAGttttgAGCTGGAGAAGTTGTGTCGATTCACCATGTCAGTGCGAAAGAATTACCGACGGGTTCCATACCACAACTGGAAGCATGCAGTGACTGTGGCTCACTGCATGTACGTCATTCTCCAGAAAACCTCTGGAATCTTCACTGAACTGGAGAGGAAAGGTCTGCTTATAGCCTGCTTGTGTCATGACTTGGACCACCGAGGCTACAGCAACAGCTACCTGCAGAAGTTTGACCACCCGCTGGCGGCGCTGTATTCCACCTCCACCATGGAACAGCATCATTTCTCCCAGACAGTGTCTATCCTGCAGCTGGAAGGGCACAATATTTTCTCCAACCTGACTTCCAGCGAGTACGAGCAGGTGCTAGAGATCATCCGCAAAGCCATCATTGCCACCGACCTGGCACTCTACTTTGGCAACCGCAAGCAGCTTTCTGATCTGCTGAGCACAGGCGCGCTGGACCTGAACAACCACGCCcacagGGACCGTGTAATTGGCCTGATGATGACTGCGTGTGATCTCTGCTCTGTTACCAAACTGTGGCCTGTCACTCGCCTCACAGCCAATGACATCTATGCAGAGTTCTGGGCTGAGGGGGATGAGATGAAGAAGATAGGAATGCAGCCCATTCCGATGATGGACAGGGATAAGAAGGATGAGGTTCCCCAGGGACAGGTGGGTTTTTACAATGCAGTGGCCATTCCCTGTTACACCACGCTGTCGGAGCTGTTCCCTCCATCTGCTCCTCTTCTTAGAGCCTGCAGGGAAAACCTGGGCCAGTGGGAGAGGATAGTTCAAGGAGAAGAGCCGTGTGCGTGGACTCCATGTGAGGTACCAGAGCAGAGTGAGCTGCTGGAGACTGGACCAGTCAAAGTGGACAACTGACTCAGCCTGAGACCTTCAGCCTTGAACACGACACCATCCGCACCCTGCCAGAGACACTGCACTTCGTTTAGAACAGTCCTACTTCCTCTGGAGATGGGAGGGAGCAGAGAGGCCAGGCAGGAGAGGTGATATTCACCAAGCAACTAAAGGAAGAATCTAAAAGAGACAAAGCAAAACAAGCGTTACCTCAGTGGGTGACAGAGGCTATAGACTCTAATTATAATGGCTCTCCCAGGATGCAGGATTCGATCGCCTCAAATCCGCTCTGTGTGGGACCGCCTTTGGTCTGAATGGACTTCTTTAGCTTCGAGTTTTCCTCGGATggttgctttttttaatgtttagtttTGAGGTGAAATCtaatttgtttttcaaatgGTTGCTTTTGTGGTCTTATATTTGAAGAGGCCTTAAAATCTGAACCTGCAGTTCCTACTAAATGACTTGTAACTGGAGAGGGTTCAGGTCATCTGAAATGGTACTTTAATTCCTGCTGTGATCAAAACATCGAACGCAAGACCTACTTGGGAGTTTCAGAGAGACGGTAGGGAGCGTAAAGGTGCATGAGGCGAGGCCGAGCACGTTGGCAGTCTTGTTGACGTGTTCTGTTCGTTTGTGCGAAGATGTTTTGCAGTACTTGAATGAAGAAATACAGCCTATTCTATGTGGGGAGGGGGTTGGGGGGGAGGAGAAAAACAAATCCTGCAGTGTATCCGTCTGAAGTAAGAGAGCTGTTGTGACGAAAGAAGCCAGATCATTCTGAACCTTACTGTAGTCACACGAGAGTCACAATGTTCCTCTCTAAAATCTATGACCATTCAACCTGATGTACAAATCAGCTTTTGATCCTCTTGTTCTCAAAGTGCAGAACCTTGGGCAATCCACTCATTTCTAAggcaaacagtaataaatgttcTCAGCATTGGTGCATTGTGACTCTGTAGTGGCAGGAACACAAAAGTAAACCATAAATTCTCATTAACAGTAatatttaattagtaattataGACTTCCAAAATGCCCATTGCACTCTCTTAAATAGGGctgtttattgttcatttttatattactgTCATATAAAGACTTATGCACAAGATGAGTTCAAACTTACATGCCTCATTAGTGCTTAGTGCTCTTAGTCCTCTGAATTTGGAGAAAGTAATACTACTGTATATGTAGGACAGGAAAGAAAACAACCACTATGACGAATGCAGTCTGGCTTGCTACCATTTGTGCccaattgtttgtttgtttttttttttttttccctaaaagcaACACATGGCACTCATGATTACTGTTCCAAAACATTCCATGGCCTTaatattataaggttctatctggaCTAAGAATAAATAAGAGACAgaaacttataataataatgtcaagATAACTAGAATGATAGTGACATGAAATACTTACTTATTAAAAGTTCACAGTAATGTCTAAAACATCTTAAAGCAATAAGTTAATATTTcatcaaataatcatgaaacattaattaaaagcaTGGAATGATATATATATGGATAGTGATGATTAATAAAATTGAGTAATAAAAAACTTGAACAGTCAAACCCTCCACTTAGTTCaagttaaaatgattttaaaacatttcaaaccattatgtgtatgaaaatgaaacactgtgttaaaataaacactgtgctcttaattttttttaaacaatatattcAAGTGAGATGGTTAATCACATGATTAGGCTACGTTTGAAAACATGGCCAAAGATAAATTAGAATGAGGAATCACCTATAAGGCGGAGACAGTGAGTTCTCTGATTAAATGGTTTGTTACGAAAATAGATCATGCATGGTTTGATTTGGCTTGcgtttctgtttttcagcctgTAATATGTTGGGACATAGCCAGCGCTCTGAACGCCTTCGTGTAAATCCTGCAGAACTGATGAGTGAATGTAACCAACACAGTGGCAAACTGCTTAACCATGTCTGTTGGGTTTTTTGGGGTACCAAAGGAGTACACTGTCAGatatgtgtgttcatgtgtgttcagTAAGTACAGCTTCcattggagtgtgtgtgcgtcactgttttcttttctttttttttctcttctctccatACTTTTGGCACATGTGCAACGCGTGTGcgtgaaaatgtgtttgtattcaGAGACGTAAGCTACACTTTTATGGTGCTACCTTAGGTCTTAGGCAGCCATGCACtttcagattgtgtgtgtgtgtgtgtgtgtatgcgccaTAAACCCTTAAAACAAGAATTCTCAAAGAATCTGAGTTAAGAGGAACTTCACAGCATTATCCACCTCAGTGACTGAGCTCATCCACAGCCTGTTTTTCTCCCCTCACATGCACTATGTTTAGAGACTCTTaacattgtattattattattattattattattattattaatactattatgTTGTCCTTAATTTTATTATGGTTCCTATTATATTGCTATTATTACTGCAACTATCAATGATTATTAGCattgttattttcttaattagaattaaattttaaattaacttatattttttatacaaaaaagttagcatttttgttttgtacagaGCAAAGTTGTGCATCATTAAAGTGAATGGTCATGTAGACCCACTGTTGCCCAAGAATAATGAGGAATGTCTTGACTGTAAATATAAGAGCAgtacttttattaaatatttctggaagaaaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63332 lncRNA upstream 135879 28100613 ~ 28100831 (+) True G53616
TU63329 lncRNA upstream 169229 28064643 ~ 28067481 (+) True G53614
TU63021 lncRNA upstream 673770 27560172 ~ 27562940 (+) True G53331
XR_003404268.2 lncRNA upstream 706244 27527865 ~ 27530466 (+) False LOC113542161
TU63400 lncRNA downstream 23819 28325642 ~ 28326183 (+) True G53682
TU63406 lncRNA downstream 72953 28374776 ~ 28378263 (+) True G53688
TU63347 lncRNA downstream 135157 28436980 ~ 28437837 (+) True G53629
TU63411 lncRNA downstream 146508 28448331 ~ 28448864 (+) True G53693
TU63422 lncRNA downstream 165950 28467773 ~ 28467983 (+) True G53699
XM_026939087.2 mRNA upstream 41147 28190899 ~ 28195563 (+) True tbxtb
XM_026939086.2 mRNA upstream 46185 28174668 ~ 28190525 (+) True si:ch211-130h14.4
XM_026939289.2 mRNA upstream 63189 28171929 ~ 28173521 (+) True prr18
XM_034302974.1 mRNA upstream 66556 28153128 ~ 28170154 (+) True sft2d1
XM_034302897.1 mRNA upstream 88262 28121446 ~ 28148448 (+) False rps6ka2
XM_034302949.1 mRNA downstream 14073 28315896 ~ 28317693 (+) True LOC113542058
XM_026939322.2 mRNA downstream 16944 28318767 ~ 28321820 (+) True pla2g12b
XM_026939321.2 mRNA downstream 16962 28318785 ~ 28321820 (+) False pla2g12b
XM_026939194.2 mRNA downstream 94369 28396192 ~ 28435412 (+) True micu1
XM_026939195.2 mRNA downstream 94369 28396192 ~ 28435412 (+) False micu1
XR_003404257.2 other upstream 1029465 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1030315 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1030340 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1243999 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 4178823 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 145554 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 803621 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 806019 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1410435 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1635725 29937548 ~ 29941181 (+) True G55091

Expression Profile