RNA id: TU63396


Basic Information

Item Value
RNA id TU63396
length 329
lncRNA type intronic
GC content 0.44
exon number 1
gene id G53678
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28290393 ~ 28290721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gccttgtgctgctagcaatgaacaACTCATGTTgtcaagttttattttttaagatgtTATCGCATTTAAATactatctttaatagagagtgcATGAGTGGCTCACTCAGAGCAGTTTCAGCGACTGTGTTCATCAGTAATGAGCACAAGGTGCTATGAATTGCACCTTGGCTCTCAAGCTGACTGAAGTGTGGACCCTGGAGAGCATGTGTGTCTCGGTGCTCAGTGCTCACAGACGTGAAGtgctctcacaaacacactcacttcactccACCATGCTTGCAAATATCTTTGCGCACGCAAATTCACGGCACtttgtgcttgttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63394 lncRNA upstream 12321 28277858 ~ 28278072 (+) True G53676
TU63384 lncRNA upstream 22052 28268058 ~ 28268341 (+) True G53666
TU63383 lncRNA upstream 22428 28267721 ~ 28267965 (+) True G53665
TU63332 lncRNA upstream 189562 28100613 ~ 28100831 (+) True G53616
TU63329 lncRNA upstream 222912 28064643 ~ 28067481 (+) True G53614
TU63349 lncRNA downstream 9112 28299833 ~ 28301492 (+) False pde10a
TU63400 lncRNA downstream 34921 28325642 ~ 28326183 (+) True G53682
TU63406 lncRNA downstream 84055 28374776 ~ 28378263 (+) True G53688
TU63347 lncRNA downstream 146259 28436980 ~ 28437837 (+) True G53629
TU63411 lncRNA downstream 157610 28448331 ~ 28448864 (+) True G53693
XM_026939087.2 mRNA upstream 94830 28190899 ~ 28195563 (+) True tbxtb
XM_026939086.2 mRNA upstream 99868 28174668 ~ 28190525 (+) True si:ch211-130h14.4
XM_026939289.2 mRNA upstream 116872 28171929 ~ 28173521 (+) True prr18
XM_034302974.1 mRNA upstream 120239 28153128 ~ 28170154 (+) True sft2d1
XM_034302897.1 mRNA upstream 141945 28121446 ~ 28148448 (+) False rps6ka2
XM_034302949.1 mRNA downstream 25175 28315896 ~ 28317693 (+) True LOC113542058
XM_026939322.2 mRNA downstream 28046 28318767 ~ 28321820 (+) True pla2g12b
XM_026939321.2 mRNA downstream 28064 28318785 ~ 28321820 (+) False pla2g12b
XM_026939194.2 mRNA downstream 105471 28396192 ~ 28435412 (+) True micu1
XM_026939195.2 mRNA downstream 105471 28396192 ~ 28435412 (+) False micu1
XR_003404257.2 other upstream 1083148 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1083998 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1084023 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1297682 26985978 ~ 26992711 (+) True G53328
TU61306 other upstream 4232506 24055241 ~ 24057887 (+) True LOC113540163
TU63410 other downstream 156656 28447377 ~ 28448311 (+) True G53692
trnav-cac other downstream 814723 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 817121 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1421537 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1646827 29937548 ~ 29941181 (+) True G55091

Expression Profile