RNA id: TU63419


Basic Information

Item Value
RNA id TU63419
length 1978
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC113542011
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28466088 ~ 28496606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGATATTAGTGCATTAGCTTTGTAATGTAACAATCAATTTGCTTATTCTAATGTAGAGTGACCTAACTAAATGTCATGGGGTGGAAATACACTAAAAAGATGCCCAAGACCTAGAAATGGCTTAAACCAAAACATATATAAGTTTTGCTTATTCATAAGTGAATGGTAAGAAAATATCAAACTCATTCAGCTGACTCATAAAGAATTTGGACATATAGGATACAGAATCATGTATAGTTTGATTAAACAACTTAGTATATCAtatatccagaaaaaaaaaatcaatgtcaaAACTGACAGAGAATACTGGAAACTTAAGGTCTGACCATCCTATTAGAGAAGGCATATAAAATAGatgtctaaaaataaaaatcttgttttacatacatattcatATCAATGTTGAAAGTGCTACATTAACAGAACTGTAGTTCTGACATCTCTGACACCCATGAAATGATTAGGAACCCCCATGGCCTAAATCCCAGTATGAATCACATTCATTGCTAATATAGGGCTTGACAAAGTCACATAATAGTTACATGGCTGCACAGCGGTGATATGGAAGTAGCTACaacaaaagtgttttttcttatCTGTGACGCACCGGGGAAAGGAAGTGGTTGAGGTTGTTTTGTTCTCACTGAATTTCCAGGAGTGGTTTACTATATAAACTCTATATGAAtaggaaaacacagaactaagAAAAGCAAGCAGCAAAATTAGGATCTTAGGACAGTCCtggtattttaaaattttttctgGTTACAAGTGCAGAatcaaaaaaatttttcttttcttttttttttgcagaaatacCTCTCTTGGAAATCACCTGCTCATTTACTATTATAACTGACAGGCCCACCACATATAATACCCAGGACCCAGACAGTTGTCAAAGTGTACAAAGGCAACAACTTACAGCCTAATTTGTATTAACTTTGTTATTAAGTTTGTATTAACTGTCAGAGCTTTATATGATGCATTATATGatgtggaagacattttgcatTGTGCTCATGACTATTTAAATAGAATAGTATTTATAACATGCAACATTTGGAATTTAAACATAACTGCAGCACACATTTTTTGagacatttaatattaaagcaTTCTGTTTCACAAATCTACATTTTTTGctattacattttaaagtatctataaaaaatgcatatatttgAAGGTTATTGCTTAAGCTTGTGACAGTCAAAGCATTCCCATAGTAATTTGCTGACAACAAGAAACTAACTGCATGCAAACTAATAACCTGATGGATTTAGTGTATTCATGCAAGTTATATtatttctgaagaaaaaaaagttattgcaGTTGCTGAGAAGGCCAGCTACATCTGGGCTGCGTGATTTGATTTCTACTGGCAGGTATTCTCAACAACTTTGATGGTGTTTGTCCAGGGCTGGCTCAACACCTTCAGTCGGCACTCTCGGCTCTTTAGGGAAGACACAAAGGCATGAAAGTTAGCTTGCATATTATAGTTAGTTAGCAATATAAATAATGATCAGCATGAAGAAAGGACAGGGTGGGTGCACTGTGTGTAGgtgaattataataatattatattacctGTGGCTCTGAATGAACGGTACACTCCTTCTCAACACCACCTTTTCTGCAGGATGTCCTGACCATCTCGACGGTGAAAATATAGTTCAGACCAGAAACAACCTACAGCCTGCGTCTGTGCCTTGATCACTCTTGAAACCTTACTGACGAACGCGTCGTTGCTCGCTTTGTTATGCTGAGCCACTGCGAAGAGCAGGGCACTCTGCACATCTTCCCTGTTCACATCCACATCTATCGGGCCTCCGAGAAGGCCAGCACTCGCTACGGCCAGGAAGACCACCAAAAGTGGAGCTACAACTTTCagaaacatgtttttcttttagatCTTAGCTCCGCAGAACAGCCGCTATGCTGAGTAACacaggaaaccagagaaaaacACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63425 lncRNA upstream 9650 28483699 ~ 28483898 (+) True G53702
TU63422 lncRNA upstream 25565 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 44684 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 55711 28436980 ~ 28437837 (+) True G53629
TU63406 lncRNA upstream 115285 28374776 ~ 28378263 (+) True G53688
TU64516 lncRNA downstream 621460 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 627887 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 955290 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 1183920 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA downstream 1187403 29684009 ~ 29684999 (+) False G54958
XM_026939247.2 mRNA upstream 1366 28466088 ~ 28492182 (+) False LOC113542011
XM_026939245.2 mRNA upstream 1366 28487543 ~ 28492182 (+) False LOC113542011
XM_034302604.1 mRNA upstream 1366 28487609 ~ 28492182 (+) False LOC113542011
XM_034302592.1 mRNA upstream 6164 28465659 ~ 28487384 (+) False LOC113542012
XM_034302594.1 mRNA upstream 6164 28466033 ~ 28487384 (+) False LOC113542012
XM_026939315.2 mRNA downstream 12449 28509055 ~ 28516011 (+) True mad2l1bp
XM_026939316.2 mRNA downstream 12573 28509179 ~ 28516011 (+) False mad2l1bp
XM_034302906.1 mRNA downstream 25740 28522346 ~ 29072960 (+) False macrod2
XM_034302907.1 mRNA downstream 25740 28522346 ~ 29072960 (+) False macrod2
XM_026939314.2 mRNA downstream 25741 28522347 ~ 29072960 (+) False macrod2
TU63410 other upstream 45237 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1286303 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1287153 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1287178 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1500837 26985978 ~ 26992711 (+) True G53328
trnav-cac other downstream 608838 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 611236 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1215652 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1440942 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1857716 30354322 ~ 30358454 (+) False mgst3b

Expression Profile