Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026939246.2 |
| length | 1353 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 7 |
| gene id | LOC113542011 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 28466088 ~ 28496606 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0047961 | glycine N-acyltransferase activity | molecular_function |
| GO:0008080 | N-acetyltransferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU63425 | lncRNA | upstream | 3645 | 28483699 ~ 28483898 (+) | True | G53702 |
| TU63422 | lncRNA | upstream | 19560 | 28467773 ~ 28467983 (+) | True | G53699 |
| TU63411 | lncRNA | upstream | 38679 | 28448331 ~ 28448864 (+) | True | G53693 |
| TU63347 | lncRNA | upstream | 49706 | 28436980 ~ 28437837 (+) | True | G53629 |
| TU63406 | lncRNA | upstream | 109280 | 28374776 ~ 28378263 (+) | True | G53688 |
| TU64516 | lncRNA | downstream | 623380 | 29118066 ~ 29143380 (+) | True | G54724 |
| TU64518 | lncRNA | downstream | 629807 | 29124493 ~ 29184455 (+) | True | G54725 |
| XR_003404270.2 | lncRNA | downstream | 957210 | 29451896 ~ 29474301 (+) | True | LOC113542173 |
| TU64762 | lncRNA | downstream | 1185840 | 29680526 ~ 29684999 (+) | True | G54958 |
| TU64763 | lncRNA | downstream | 1189323 | 29684009 ~ 29684999 (+) | False | G54958 |
| XM_034302592.1 | mRNA | upstream | 159 | 28465659 ~ 28487384 (+) | False | LOC113542012 |
| XM_034302594.1 | mRNA | upstream | 159 | 28466033 ~ 28487384 (+) | False | LOC113542012 |
| XM_034302597.1 | mRNA | upstream | 159 | 28470488 ~ 28487384 (+) | False | LOC113542012 |
| XM_034302596.1 | mRNA | upstream | 159 | 28474167 ~ 28487384 (+) | True | LOC113542012 |
| XM_034302595.1 | mRNA | upstream | 159 | 28481858 ~ 28487384 (+) | False | LOC113542012 |
| XM_026939315.2 | mRNA | downstream | 14369 | 28509055 ~ 28516011 (+) | True | mad2l1bp |
| XM_026939316.2 | mRNA | downstream | 14493 | 28509179 ~ 28516011 (+) | False | mad2l1bp |
| XM_034302906.1 | mRNA | downstream | 27660 | 28522346 ~ 29072960 (+) | False | macrod2 |
| XM_034302907.1 | mRNA | downstream | 27660 | 28522346 ~ 29072960 (+) | False | macrod2 |
| XM_026939314.2 | mRNA | downstream | 27661 | 28522347 ~ 29072960 (+) | False | macrod2 |
| TU63410 | other | upstream | 39232 | 28447377 ~ 28448311 (+) | True | G53692 |
| XR_003404257.2 | other | upstream | 1280298 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | upstream | 1281148 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | upstream | 1281173 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63018 | other | upstream | 1494832 | 26985978 ~ 26992711 (+) | True | G53328 |
| trnav-cac | other | downstream | 610758 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| trnav-aac | other | downstream | 613156 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| XR_004577899.1 | other | downstream | 1217572 | 29712258 ~ 29747347 (+) | False | ablim1a |
| TU64923 | other | downstream | 1442862 | 29937548 ~ 29941181 (+) | True | G55091 |
| TU65142 | other | downstream | 1859636 | 30354322 ~ 30358454 (+) | False | mgst3b |
