Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026939247.2 |
| length | 1103 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | LOC113542011 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 28466088 ~ 28496606 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0047961 | glycine N-acyltransferase activity | molecular_function |
| GO:0008080 | N-acetyltransferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU63411 | lncRNA | upstream | 17224 | 28448331 ~ 28448864 (+) | True | G53693 |
| TU63347 | lncRNA | upstream | 28251 | 28436980 ~ 28437837 (+) | True | G53629 |
| TU63406 | lncRNA | upstream | 87825 | 28374776 ~ 28378263 (+) | True | G53688 |
| TU63400 | lncRNA | upstream | 139905 | 28325642 ~ 28326183 (+) | True | G53682 |
| TU63349 | lncRNA | upstream | 164596 | 28299833 ~ 28301492 (+) | False | pde10a |
| TU63419 | lncRNA | downstream | 1366 | 28493548 ~ 28496606 (+) | True | LOC113542011 |
| TU64516 | lncRNA | downstream | 625884 | 29118066 ~ 29143380 (+) | True | G54724 |
| TU64518 | lncRNA | downstream | 632311 | 29124493 ~ 29184455 (+) | True | G54725 |
| XR_003404270.2 | lncRNA | downstream | 959714 | 29451896 ~ 29474301 (+) | True | LOC113542173 |
| TU64762 | lncRNA | downstream | 1188344 | 29680526 ~ 29684999 (+) | True | G54958 |
| XM_026939274.2 | mRNA | upstream | 1390 | 28453773 ~ 28464698 (+) | True | psap |
| XM_034302812.1 | mRNA | upstream | 1390 | 28453773 ~ 28464698 (+) | False | psap |
| XM_026939273.2 | mRNA | upstream | 1390 | 28453773 ~ 28464698 (+) | False | psap |
| XM_026939138.2 | mRNA | upstream | 13979 | 28449126 ~ 28452109 (+) | True | mrps6 |
| XM_026939199.2 | mRNA | upstream | 30676 | 28396193 ~ 28435412 (+) | False | micu1 |
| XM_026939315.2 | mRNA | downstream | 16873 | 28509055 ~ 28516011 (+) | True | mad2l1bp |
| XM_026939316.2 | mRNA | downstream | 16997 | 28509179 ~ 28516011 (+) | False | mad2l1bp |
| XM_034302906.1 | mRNA | downstream | 30164 | 28522346 ~ 29072960 (+) | False | macrod2 |
| XM_034302907.1 | mRNA | downstream | 30164 | 28522346 ~ 29072960 (+) | False | macrod2 |
| XM_026939314.2 | mRNA | downstream | 30165 | 28522347 ~ 29072960 (+) | False | macrod2 |
| TU63410 | other | upstream | 17777 | 28447377 ~ 28448311 (+) | True | G53692 |
| XR_003404257.2 | other | upstream | 1258843 | 27197909 ~ 27207245 (+) | False | znf451 |
| XR_004577886.1 | other | upstream | 1259693 | 27197909 ~ 27206395 (+) | False | znf451 |
| XR_003404258.2 | other | upstream | 1259718 | 27197909 ~ 27206370 (+) | True | znf451 |
| TU63018 | other | upstream | 1473377 | 26985978 ~ 26992711 (+) | True | G53328 |
| trnav-cac | other | downstream | 613262 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| trnav-aac | other | downstream | 615660 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| XR_004577899.1 | other | downstream | 1220076 | 29712258 ~ 29747347 (+) | False | ablim1a |
| TU64923 | other | downstream | 1445366 | 29937548 ~ 29941181 (+) | True | G55091 |
| TU65142 | other | downstream | 1862140 | 30354322 ~ 30358454 (+) | False | mgst3b |
