RNA id: TU63425


Basic Information

Item Value
RNA id TU63425
length 200
lncRNA type read_through
GC content 0.41
exon number 1
gene id G53702
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28483699 ~ 28483898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACATGCACATGAAGTTATgctgaaataaacagatttttacacatttgggagtttaatatttatgttactGATCATAAACAATTGGCCATTCAGATTTGCTTGCTGGATAATAGCTTACGAGTCATATTTCAGAGATAGGGGAGAACCCCCCCCCCTGTGGATCTGTGCCACTGTGTGAAACAGGTAAAACGTGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63422 lncRNA upstream 15716 28467773 ~ 28467983 (+) True G53699
TU63411 lncRNA upstream 34835 28448331 ~ 28448864 (+) True G53693
TU63347 lncRNA upstream 45862 28436980 ~ 28437837 (+) True G53629
TU63406 lncRNA upstream 105436 28374776 ~ 28378263 (+) True G53688
TU63400 lncRNA upstream 157516 28325642 ~ 28326183 (+) True G53682
TU63419 lncRNA downstream 9650 28493548 ~ 28496606 (+) True LOC113542011
TU64516 lncRNA downstream 634168 29118066 ~ 29143380 (+) True G54724
TU64518 lncRNA downstream 640595 29124493 ~ 29184455 (+) True G54725
XR_003404270.2 lncRNA downstream 967998 29451896 ~ 29474301 (+) True LOC113542173
TU64762 lncRNA downstream 1196628 29680526 ~ 29684999 (+) True G54958
XM_026939274.2 mRNA upstream 19001 28453773 ~ 28464698 (+) True psap
XM_034302812.1 mRNA upstream 19001 28453773 ~ 28464698 (+) False psap
XM_026939273.2 mRNA upstream 19001 28453773 ~ 28464698 (+) False psap
XM_026939138.2 mRNA upstream 31590 28449126 ~ 28452109 (+) True mrps6
XM_026939199.2 mRNA upstream 48287 28396193 ~ 28435412 (+) False micu1
XM_026939246.2 mRNA downstream 3645 28487543 ~ 28494686 (+) False LOC113542011
XM_026939245.2 mRNA downstream 3645 28487543 ~ 28492182 (+) False LOC113542011
XM_034302604.1 mRNA downstream 3711 28487609 ~ 28492182 (+) False LOC113542011
XM_026939315.2 mRNA downstream 25157 28509055 ~ 28516011 (+) True mad2l1bp
XM_026939316.2 mRNA downstream 25281 28509179 ~ 28516011 (+) False mad2l1bp
TU63410 other upstream 35388 28447377 ~ 28448311 (+) True G53692
XR_003404257.2 other upstream 1276454 27197909 ~ 27207245 (+) False znf451
XR_004577886.1 other upstream 1277304 27197909 ~ 27206395 (+) False znf451
XR_003404258.2 other upstream 1277329 27197909 ~ 27206370 (+) True znf451
TU63018 other upstream 1490988 26985978 ~ 26992711 (+) True G53328
trnav-cac other downstream 621546 29105444 ~ 29105516 (+) True trnav-cac
trnav-aac other downstream 623944 29107842 ~ 29107914 (+) True trnav-aac
XR_004577899.1 other downstream 1228360 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 1453650 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 1870424 30354322 ~ 30358454 (+) False mgst3b

Expression Profile