RNA id: TU63458


Basic Information

Item Value
RNA id TU63458
length 451
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G53729
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27530576 ~ 27803450 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAACACCAGCAACAGCCAAAAGCCACCGGATCGACTCCATTTTCCCTCTCCCGTCGAAGTAGTGCAGTACAACCTTTCCAGCATCGAGGAGACGGTGACTTTTCCCCTGTATATAAAGGCAGCTTGCGCGCTGGTACTGTCGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCTAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCACTCCATGTGCGTCCCTCCCGAAGCTCCGCGCTCGGTGGAAGAGGACAGGTTCCTAGATGGACGGGCATCGTTGGTATAGAAGTAGCTGCTACCCTGCTAGAACCTCCAAACAAGCTCAAGGCCCATTTGTAGGAGAAACGTAGGGAAGTCAAGCTTCGCGACTTCAGACACATCCAAGTGAGGCGCTGCACGTGGCAGTCTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63617 lncRNA downstream 162619 27367361 ~ 27368060 (-) True G53862
TU63597 lncRNA downstream 211057 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 216328 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 276727 27226345 ~ 27253952 (-) True G53732
XR_004577888.1 lncRNA downstream 328781 27197359 ~ 27201898 (-) True LOC117596899
XR_004577818.1 lncRNA upstream 445486 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 459329 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 567415 28100373 ~ 28100589 (-) True G54201
TU63970 lncRNA upstream 573757 28106715 ~ 28175966 (-) False G54204
TU63973 lncRNA upstream 573757 28106715 ~ 28107820 (-) True G54204
XM_026939512.2 mRNA downstream 4737 27518869 ~ 27525942 (-) True polh
XM_026939457.2 mRNA downstream 26371 27501662 ~ 27504308 (-) True LOC113542117
XM_026939479.2 mRNA downstream 56958 27437145 ~ 27473721 (-) True pcsk2
XM_026939502.2 mRNA downstream 109525 27412030 ~ 27421154 (-) True prokr1b
XM_026939134.1 mRNA downstream 145168 27382304 ~ 27385511 (-) True cnrip1b
XM_026939227.2 mRNA upstream 4811 27537769 ~ 27541331 (-) True zgc:163080
XM_026939225.2 mRNA upstream 15307 27548265 ~ 27560020 (-) True agpat5
XM_034302635.1 mRNA upstream 29299 27562257 ~ 27598047 (-) False mcph1
XM_026939280.2 mRNA upstream 29299 27562257 ~ 27597952 (-) False mcph1
XM_026939283.2 mRNA upstream 29299 27562257 ~ 27597644 (-) False mcph1
XR_003404274.1 other downstream 1620560 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2794792 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2878832 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2878832 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3490579 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 4818 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 900262 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1668974 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2146453 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2578873 30111831 ~ 30122655 (-) True G55209

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012343 True 322 misc_RNA 0.58 1 NC_007124.7 825904 ~ 826225 (-)
grasscarp (Ctenopharyngodon idella) TU45554 False 406 lncRNA 0.41 2 CI01000005 6398299 ~ 6476877 (-)
rainbow trout (Oncorhynchus mykiss) TU45554 True 380 lncRNA 0.42 1 NC_048565.1 37892852 ~ 37893231 (-)
rainbow trout (Oncorhynchus mykiss) TU133578 True 291 lncRNA 0.51 2 NC_048566.1 15295142 ~ 15304868 (+)
rainbow trout (Oncorhynchus mykiss) TU1930575 True 334 lncRNA 0.56 2 NC_048584.1 34626718 ~ 34683245 (+)
eurasian perch (Perca fluviatilis) TU264914 True 307 lncRNA 0.59 1 NC_053130.1 19218736 ~ 19219042 (+)
eurasian perch (Perca fluviatilis) TU45554 True 6808 lncRNA 0.44 6 NC_053114.1 44871109 ~ 44906359 (-)
bowfin (Amia calva) TU110768 True 277 lncRNA 0.60 1 CM030130.1 31988774 ~ 31989050 (-)
tiger barb (Puntius tetrazona) TU133578 True 407 lncRNA 0.52 1 NC_056711.1 2481369 ~ 2481775 (+)
mexican tetra (Astyanax mexicanus) TU45554 True 879 lncRNA 0.36 1 NC_035900.1 2192090 ~ 2192968 (-)