RNA id: XM_026939227.2


Basic Information

Item Value
RNA id XM_026939227.2
length 639
RNA type mRNA
GC content 0.42
exon number 5
gene id zgc:163080
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27537769 ~ 27541331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATACGTCCTAGGTGCATGTTTACTTCCTCGTGACGTAACACGTAATACGTGCACTGATACCGGAAGAGCCGAGAAAGAAACATTAACGCGAATGAATCGTGTTTGTTGGACTTTTTAAAGACATCAGTAACTGGAAATATCTGggCAGCATGGCAGTTGACTGGCTCGGCTTTGGCTATGCAGCTACTATTTTATTCGGAGGCTTTATGGGATATAAGAGAAAAGGAAGCTTGATGTCACTAATTGCGGGATTATTTTTTGGTGGCATATCTGCATACGGGGCCTTTAGGATAACTCTTGACCCACAAGACAAATGGACCTCGCTTGCTGCTTCTGGTGCTCTGGCAGTTGTGATGGGAATAAGATTCAAGAAATCTGGGAAATTAATGCCTGCAGGTATTATGGCTGGATTAAGCCTCATGATGGTCATCCGACTGCTGATCCTCTGAACATGGCCAGGACATGAAGCTTATTCAACTACAGCTTTCCTGGCAATAttcttatatacacacactgcactgcatcAGCCCCCTCACTAATTATGCACTTATTGAATCATCACACTTCATGTAATCATGTCAGTTATTTTGAACACTCATCTTGTACATTCCAaataaagcttttgttttttttaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63458 lncRNA downstream 4811 27530679 ~ 27532958 (-) True G53729
TU63617 lncRNA downstream 169709 27367361 ~ 27368060 (-) True G53862
TU63597 lncRNA downstream 218147 27318088 ~ 27319622 (-) True G53851
XR_004577875.1 lncRNA downstream 223418 27305874 ~ 27314351 (-) True LOC117596885
TU63467 lncRNA downstream 283817 27226345 ~ 27253952 (-) True G53732
XR_004577818.1 lncRNA upstream 437113 27978444 ~ 28028256 (-) False LOC113542054
XR_003404251.2 lncRNA upstream 450956 27992287 ~ 28028255 (-) True LOC113542054
TU63967 lncRNA upstream 559042 28100373 ~ 28100589 (-) True G54201
TU63970 lncRNA upstream 565384 28106715 ~ 28175966 (-) False G54204
TU63973 lncRNA upstream 565384 28106715 ~ 28107820 (-) True G54204
XM_026939512.2 mRNA downstream 11827 27518869 ~ 27525942 (-) True polh
XM_026939457.2 mRNA downstream 33461 27501662 ~ 27504308 (-) True LOC113542117
XM_026939479.2 mRNA downstream 64048 27437145 ~ 27473721 (-) True pcsk2
XM_026939502.2 mRNA downstream 116615 27412030 ~ 27421154 (-) True prokr1b
XM_026939134.1 mRNA downstream 152258 27382304 ~ 27385511 (-) True cnrip1b
XM_026939225.2 mRNA upstream 6934 27548265 ~ 27560020 (-) True agpat5
XM_034302635.1 mRNA upstream 20926 27562257 ~ 27598047 (-) False mcph1
XM_026939280.2 mRNA upstream 20926 27562257 ~ 27597952 (-) False mcph1
XM_026939283.2 mRNA upstream 20926 27562257 ~ 27597644 (-) False mcph1
XM_026939281.2 mRNA upstream 20926 27562257 ~ 27597644 (-) True mcph1
XR_003404274.1 other downstream 1627650 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2801882 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2885922 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2885922 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3497669 24017264 ~ 24040100 (-) False mlh1
TU64047 other upstream 891889 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 1660601 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2138080 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2570500 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 2570703 30112034 ~ 30122822 (-) False G55209

Expression Profile