RNA id: TU63476


Basic Information

Item Value
RNA id TU63476
length 545
lncRNA type sense_over
GC content 0.52
exon number 2
gene id dst
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27057897 ~ 27195955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaaattgctaGACAGTGTTTCATTCTGATGCTGATAAAAGACATGTTTCAGAGCCAAACAAGAAAGTGCGTGAGGCGCAAACGCGCGCACTGAGCGCAAgttgcgcgtgcgtgtgtgcggtCACGCTCCGTTAATCACACACCATCCCGCAAGGCCACGCACGCTCAGAGCGATGGCGCTGTAACACCACGGTTTCTATCCATCCCATAATAAATATAGTCAGTCTGTATCCAGGGAGCGATGACGCGTTATCATGCCACAAGCCCTCGCGCAGCAGCCCAGTCTTTTCTCTCAGTCTGCGCGGTTCCGCATCAGTAGAATACCGAGATCGATCTGGATGAACGCGATTACCGTCCGGAGAAGGGTGCGGTTCTCGTCAGAGTTGCTTTTATAGCAATGATAAGCGGCACGAGGCTGTGGGTAATTGTTCCAGCTGAAATCTGCACAGCGGTAAGTCTCCGTCTTGTCCTGTCGGGGGAGCCAGACGCATTCGGACTTTTATTTCTCCCCACACGCCGTTTGCTGCTGGAttttttttttaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63549 lncRNA downstream 77773 27026815 ~ 27027038 (-) True G53809
TU63501 lncRNA downstream 236934 26867658 ~ 26867877 (-) True G53761
TU62918 lncRNA downstream 305203 26798728 ~ 26799608 (-) True G53250
TU62919 lncRNA downstream 305293 26798679 ~ 26799518 (-) False G53250
XR_003404260.2 lncRNA downstream 363292 26738543 ~ 26741519 (-) True LOC113542110
XR_004577888.1 lncRNA upstream 11283 27197359 ~ 27201898 (-) True LOC117596899
TU63467 lncRNA upstream 40269 27226345 ~ 27253952 (-) True G53732
XR_004577875.1 lncRNA upstream 119798 27305874 ~ 27314351 (-) True LOC117596885
TU63597 lncRNA upstream 132012 27318088 ~ 27319622 (-) True G53851
TU63617 lncRNA upstream 181285 27367361 ~ 27368060 (-) True G53862
XM_026939534.2 mRNA downstream 49133 27033924 ~ 27055678 (-) True zmp:0000000760
XM_026939533.2 mRNA downstream 78921 26977997 ~ 27025890 (-) False col21a1
XM_026939531.2 mRNA downstream 78926 26975725 ~ 27025885 (-) False col21a1
XM_026939530.2 mRNA downstream 78926 26975725 ~ 27025885 (-) True col21a1
XM_026939532.2 mRNA downstream 78927 26975725 ~ 27025884 (-) False col21a1
XM_026939380.2 mRNA upstream 27024 27213100 ~ 27223218 (-) True rab23
XM_026939395.2 mRNA upstream 42938 27229014 ~ 27246364 (-) True ifngr1l
XM_026939469.2 mRNA upstream 150972 27337048 ~ 27341117 (-) True perp
XM_026939075.2 mRNA upstream 168926 27355002 ~ 27360666 (-) True wdr92
XM_026939077.2 mRNA upstream 180242 27366318 ~ 27380631 (-) True ppp3r1a
XR_003404274.1 other downstream 1194692 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 2368924 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 2452964 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other downstream 2452964 24471703 ~ 24651847 (-) False lyst
XR_004577819.1 other downstream 3064711 24017264 ~ 24040100 (-) False mlh1
TU63465 other upstream 351700 27537776 ~ 27541299 (-) False zgc:163080
TU64047 other upstream 1247144 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 2015856 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 2493335 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 2925755 30111831 ~ 30122655 (-) True G55209

Expression Profile