RNA id: TU64065


Basic Information

Item Value
RNA id TU64065
length 415
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G54287
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28267159 ~ 28267573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAATAGCAAGTGGACACAGGAGGAGATTGTTGATAACAGCAGAGCTCACGTTGCTTTTGCAGGACAGCATACCTGTAGGAGGGCTGCTGCTCTTGCGCTTCAGCCATCTGTCCACCGTCTCCGCGCTCACGCTCTCCAGCACAAACTCATCCAGCATCTGCGGGTGCAGGGAAAGGTACGCCTTCACTTTCTCATCCGTCAGACCTGCAAGACAGCCACTGCCATCAGTCCCTGTGCTTTGCTTGTACAAATATCAGAGCAGTGGGAAACATTTCTAATAGACATTTTGAAGAACTGTGTGCAGGAACAGTATTAACAGTGAATGAAACTTGTGGCACCCGTTAGCATGAGGCTACGCTAACTGGCAAAGAAATCACGTGCTCGGCTAGAGTAGAAAATCTGACCTCAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64054 lncRNA downstream 18526 28247670 ~ 28248633 (-) True G54276
TU64004 lncRNA downstream 29494 28237215 ~ 28237665 (-) True G54229
TU63970 lncRNA downstream 91193 28106715 ~ 28175966 (-) False G54204
TU64071 lncRNA upstream 8270 28275843 ~ 28276054 (-) True G54293
TU64073 lncRNA upstream 10919 28278492 ~ 28281500 (-) True G54295
TU64076 lncRNA upstream 22465 28290038 ~ 28290479 (-) True G54298
TU64049 lncRNA upstream 28363 28295936 ~ 28297769 (-) True G54271
TU64048 lncRNA upstream 31347 28298920 ~ 28301519 (-) True G54270
XM_026939399.2 mRNA downstream 167703 28067773 ~ 28099456 (-) True myom2b
XM_034303053.1 mRNA downstream 169239 28067773 ~ 28097920 (-) False myom2b
XM_026939279.2 mRNA downstream 669516 27562258 ~ 27597643 (-) False mcph1
XM_026939320.2 mRNA upstream 47140 28314713 ~ 28330532 (-) True oit3
XM_026939354.2 mRNA upstream 66052 28333625 ~ 28388691 (-) True mcu
XM_026939481.2 mRNA upstream 169432 28437005 ~ 28446340 (-) True nolc1
XM_026939250.2 mRNA upstream 201383 28468956 ~ 28485759 (-) True LOC113542013
XM_034302605.1 mRNA upstream 201383 28468956 ~ 28476243 (-) False LOC113542013
TU63465 other downstream 725860 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 2357040 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 3531272 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 3615312 24453119 ~ 24651847 (-) False lyst
TU64047 other upstream 165647 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 934359 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 1411838 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 1844258 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 1844461 30112034 ~ 30122822 (-) False G55209

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000005_01567956_01569421.mRNA True 1071 mRNA 0.41 2 CI01000005 1567956 ~ 1570139 (+)