RNA id: TU64076


Basic Information

Item Value
RNA id TU64076
length 442
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G54298
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28290038 ~ 28290479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctattaaagatagtATTTAAATGCGATAacatcttaaaaaataaaacttgacAACATGAGTtgttcattgctagcagcacaaggcagcaaccaacataaacagagcaaAATTAAACATTCCCAGTTGCCCCAATtgcttaatactaagtaggttactcattttggtATAAGTATCAGTATCATGTatcaaaaaaacatgtactcatactcagtctgaaaaaagaaaactggcattgatgcatccctagtaAGAACACTGTTCTGTAAATATAATGCTAAATGCCAAAAGCTTATTGGAACTCACCtaatttctttggttttcttaAATACCGGCTTCCCTTCATTCTCCTCCCCGATGTCAAAGAGGTCAGAGTACAGCTCTTTGTTATTGTGATCGACCTGGAAGAGGGCGCATCTGTCTGCATTCACCAGGTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64073 lncRNA downstream 8538 28278492 ~ 28281500 (-) True G54295
TU64071 lncRNA downstream 13984 28275843 ~ 28276054 (-) True G54293
TU64065 lncRNA downstream 22465 28267159 ~ 28267573 (-) True G54287
TU64054 lncRNA downstream 41405 28247670 ~ 28248633 (-) True G54276
TU64004 lncRNA downstream 52373 28237215 ~ 28237665 (-) True G54229
TU64049 lncRNA upstream 5457 28295936 ~ 28297769 (-) True G54271
TU64048 lncRNA upstream 8441 28298920 ~ 28301519 (-) True G54270
TU64079 lncRNA upstream 22467 28312946 ~ 28314129 (-) True G54301
TU64081 lncRNA upstream 24797 28315276 ~ 28315490 (-) True G54303
TU64042 lncRNA upstream 30054 28320533 ~ 28321814 (-) True G54265
XM_026939399.2 mRNA downstream 190582 28067773 ~ 28099456 (-) True myom2b
XM_034303053.1 mRNA downstream 192118 28067773 ~ 28097920 (-) False myom2b
XM_026939279.2 mRNA downstream 692395 27562258 ~ 27597643 (-) False mcph1
XM_026939320.2 mRNA upstream 24234 28314713 ~ 28330532 (-) True oit3
XM_026939354.2 mRNA upstream 43146 28333625 ~ 28388691 (-) True mcu
XM_026939481.2 mRNA upstream 146526 28437005 ~ 28446340 (-) True nolc1
XM_026939250.2 mRNA upstream 178477 28468956 ~ 28485759 (-) True LOC113542013
XM_034302605.1 mRNA upstream 178477 28468956 ~ 28476243 (-) False LOC113542013
TU63465 other downstream 748739 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 2379919 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 3554151 24682246 ~ 24735887 (-) False herc4
XR_003404244.2 other downstream 3638191 24453119 ~ 24651847 (-) False lyst
TU64047 other upstream 142741 28433220 ~ 28435411 (-) True G54269
trnae-cuc_11 other upstream 911453 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 1388932 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 1821352 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 1821555 30112034 ~ 30122822 (-) False G55209

Expression Profile