RNA id: TU64569


Basic Information

Item Value
RNA id TU64569
length 1760
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G54775
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29133880 ~ 29135669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaagaaaaaaaaaaaaaaaaaaaaaaaaacaaataaacccaAAGAAAGGCTACAGAATTATCTTATCCATACtgctttttatctctttaacaATGTTAACCTAAAGAGGGAAAAGAAACGCAGCTCTATGCTAGTGCGAGTTAATCAGAAACACAAAGATGGTTAAATAAGGATTTCTTTAAGATACAGGATATTCACTTATTGTCTTCAGCTCCGTCctttcaacagaaaaaaaaacggtttaaagtttaaaaaaaaaaaaaaaaaaattattattaaattattcgGTATATTCAGCACTCTGCCTCCAATCTTCAAAACCTAGTCCCTCCTAAAGCCACTTGGAAAACATGACAAACGAGATAACTgtgtgttggggaaaaaaaagggagggaAAGTGCAAAACTGGAAGTGGGAAGAAAAGTGAAGGATGAATAAAAAGGAGGGCCAGAACACAGGGATGGTGGGGAGATAAAGAAGTAAAAGGAGCAAAGAATCATTTTGAGAACTGTAGCTTTCTGGAGGCAGAGTGTCACTAAATATGGGGTCTGACTGGAGCTGTAAGTATACAGAAGTGTATGTAGACCTGAACTACAGTTCCCATAAAGCCCTGGGGCGCACAATCCCTAATGAACCCGGTCCGAAGGGTACCGATTTAGCTTCTGTCCATGTGCTGGGCACACACAGACCACATGTGGGTTGTGTGTATATGAACATAATATATCAAAACAGCTCATGTGTATGTATGACtatgcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagGAATGAGTGTGAGAAATAGAGGCATAGCGCTGCCTCTAAAGTGACAGCAGAGGGCATCTCCAGGGCCAACGAAGGACGTGAGGGTGTGCGATCCACGTCAAACTCCATTTCCGATCCACTGAAGGAAGTGTGAGGAAGTCGTGAATTCAGGTTTAATATCAATAACAGCGTCTggaggcaaaagaaaaaaaattctcgaAAGGAGGTCGAGGATGAAAGGAGGTCAGGGTGTCGGGAGGTTAGAGGGTGGAACCCGATTCCTCTCATGAGGTCAAAGGTCGGTCCTGATCACAGATCACGCTTTCCTCAGCTTTGTGGCCTGATGGAGGTTTTCATGTTGGGAATTCGGGAATGACCCCTGACCTAGTGACCTATACTTGAAAGCCTAAATTGAGATAACAACAACAGGTGattctttcttttaaattatgATAGACTGTAGAATCGAAActggaggagggaggaaaaaaaaaaaacagagatgatgGCAGCATGCCAAAAACGCCAGTAGATGATtctcctttctttgttttgagaTGGTGTTCTTCAAACAAGATCCACAGGAAGGAGATTAAGACAGTTGTGAGGAGTGTCACGGCCAGGAGattgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtaggaacagTGCTAAGTGAGTGGGGTGTGTTTTACATTGTTCAGCACTGAGGATCTAAGCACCACTGGCCTCAGTTGAATCAGGGGAAGTGAGACTGGAAGGGGAGTATACAGTATTGGGGTGTTTGTGTATGcaggtgtgtgcgtgtttttgtgtgtgtgtgtgtgtgtgttcaggaacATTCCTCTCCGATGCGCTGGCAGGATCGGCCCACCTTACGGTCCAGCTTGACCATCTTAAGCACGGCTTCCTCTCTCCCGCGACCCAAGTGGTCGAACAGGCAGTCGTGCTGCTCGGGCAGCCGGTGCAGCATGCAGAATACg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577809.1 lncRNA downstream 51914 29077310 ~ 29081966 (-) True LOC117596831
XR_004577853.1 lncRNA downstream 125077 29003280 ~ 29008803 (-) True LOC117596864
TU64108 lncRNA downstream 635992 28496771 ~ 28497888 (-) True G54327
TU64103 lncRNA downstream 648635 28484982 ~ 28485245 (-) True G54324
TU64099 lncRNA downstream 662782 28470891 ~ 28471098 (-) True G54320
TU64653 lncRNA upstream 127091 29262760 ~ 29263429 (-) True G54855
XR_003404254.2 lncRNA upstream 133427 29269096 ~ 29270020 (-) True LOC113542069
XR_003404243.2 lncRNA upstream 495332 29631001 ~ 29639339 (-) True LOC113542002
TU64755 lncRNA upstream 495352 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA upstream 502917 29638586 ~ 29639350 (-) False LOC113542002
XM_026939311.2 mRNA downstream 513855 28610623 ~ 28620025 (-) True flrt3
XM_026939312.2 mRNA downstream 613051 28515778 ~ 28520829 (-) True ephx5
XM_026939483.2 mRNA downstream 628603 28504100 ~ 28505277 (-) True LOC113542138
XM_026939117.2 mRNA downstream 632482 28499606 ~ 28501398 (-) True LOC113541930
XM_026939251.2 mRNA downstream 637278 28494642 ~ 28496602 (-) True LOC113542015
XM_034301980.1 mRNA upstream 546876 29682545 ~ 29684864 (-) True LOC113541985
XM_026939190.2 mRNA upstream 551061 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA upstream 551061 29686730 ~ 29695056 (-) False zfyve21
XM_034303164.1 mRNA upstream 637716 29773385 ~ 29779069 (-) True dact2
XM_026939507.2 mRNA upstream 646594 29782263 ~ 29788784 (-) True eif3s6ip
TU64047 other downstream 698469 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 1592581 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3223761 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 4397993 24682246 ~ 24735887 (-) False herc4
XR_004577838.1 other downstream 4482033 24471703 ~ 24651847 (-) False lyst
trnae-cuc_11 other upstream 66263 29201932 ~ 29202003 (-) True trnae-cuc_11
LOC113541988 other upstream 543742 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 976162 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 976365 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 976653 30112322 ~ 30122655 (-) False G55209

Expression Profile