RNA id: TU64653


Basic Information

Item Value
RNA id TU64653
length 582
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G54855
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29262760 ~ 29263429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATAGTTCACCCAACATAGGGGAGGAGCAAACATATAAACGCTTACTCAAAAGCCTTCTCTGAAATTTCTCTTGGTGCTCTGTGGGCCCtctttttatgaataaaaaagatTGAAAACAAATTGAAAATGACCTTAATGTTGAGGAGGACCCTGATTATGAGCATCCTCCTCTGATGAGAATGATACTCTTAGCGTTGACCCTCCTGTTGCCTCTCAACCACCAGCAGACACAttaccttccaaaaatgcaaagcTATTGTGGTCCCTCTCCCCACCTTAGTGCTGCTAATGTCATCAAAAATGGTCCCAGCCCCACCAGATACACTGAGGGTGGTATTACACATGGCTGAAGGACTGAATGGTCATAACATTACAtgtgatcatttttttcacattgtatATGCTGGGtgaaaaactgctgaaaaggaaGGTTACCATGTAGGggacaatgagaaaaaaacaagctggagCTTCCCTCTGAGCTTCTTGCAATGAAGAACAAGAAGGTAACATCTTCAGTGTTTTGCCTTCACTGACCGAGCCACTGTCATCTCCTATTGCCccaagaaagggaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64569 lncRNA downstream 127091 29133880 ~ 29135669 (-) True G54775
XR_004577809.1 lncRNA downstream 180794 29077310 ~ 29081966 (-) True LOC117596831
XR_004577853.1 lncRNA downstream 253957 29003280 ~ 29008803 (-) True LOC117596864
TU64108 lncRNA downstream 764872 28496771 ~ 28497888 (-) True G54327
TU64103 lncRNA downstream 777515 28484982 ~ 28485245 (-) True G54324
XR_003404254.2 lncRNA upstream 5667 29269096 ~ 29270020 (-) True LOC113542069
XR_003404243.2 lncRNA upstream 367572 29631001 ~ 29639339 (-) True LOC113542002
TU64755 lncRNA upstream 367592 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA upstream 375157 29638586 ~ 29639350 (-) False LOC113542002
TU64790 lncRNA upstream 416694 29680123 ~ 29683525 (-) True G54976
XM_026939311.2 mRNA downstream 642735 28610623 ~ 28620025 (-) True flrt3
XM_026939312.2 mRNA downstream 741931 28515778 ~ 28520829 (-) True ephx5
XM_026939483.2 mRNA downstream 757483 28504100 ~ 28505277 (-) True LOC113542138
XM_026939117.2 mRNA downstream 761362 28499606 ~ 28501398 (-) True LOC113541930
XM_026939251.2 mRNA downstream 766158 28494642 ~ 28496602 (-) True LOC113542015
XM_034301980.1 mRNA upstream 419116 29682545 ~ 29684864 (-) True LOC113541985
XM_026939190.2 mRNA upstream 423301 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA upstream 423301 29686730 ~ 29695056 (-) False zfyve21
XM_034303164.1 mRNA upstream 509956 29773385 ~ 29779069 (-) True dact2
XM_026939507.2 mRNA upstream 518834 29782263 ~ 29788784 (-) True eif3s6ip
trnae-cuc_11 other downstream 60757 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 827349 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 1721461 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3352641 25910018 ~ 25910119 (-) True LOC113542183
XR_004577835.1 other downstream 4526873 24682246 ~ 24735887 (-) False herc4
LOC113541988 other upstream 415982 29679411 ~ 29681726 (-) True LOC113541988
TU65059 other upstream 848402 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 848605 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 848893 30112322 ~ 30122655 (-) False G55209
XR_004577811.1 other upstream 889479 30152908 ~ 30161223 (-) True khdrbs1a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU220595 True 234 lncRNA 0.46 1 NC_053127.1 2570566 ~ 2570799 (-)