Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU64755 |
| length | 546 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC113542002 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 29631001 ~ 29639350 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404254.2 | lncRNA | downstream | 361001 | 29269096 ~ 29270020 (-) | True | LOC113542069 |
| TU64653 | lncRNA | downstream | 367592 | 29262760 ~ 29263429 (-) | True | G54855 |
| TU64569 | lncRNA | downstream | 495352 | 29133880 ~ 29135669 (-) | True | G54775 |
| XR_004577809.1 | lncRNA | downstream | 549055 | 29077310 ~ 29081966 (-) | True | LOC117596831 |
| XR_004577853.1 | lncRNA | downstream | 622218 | 29003280 ~ 29008803 (-) | True | LOC117596864 |
| TU64790 | lncRNA | upstream | 40773 | 29680123 ~ 29683525 (-) | True | G54976 |
| TU64791 | lncRNA | upstream | 66393 | 29705743 ~ 29709036 (-) | True | G54977 |
| TU64885 | lncRNA | upstream | 233698 | 29873048 ~ 29876760 (-) | False | LOC113542120 |
| TU64886 | lncRNA | upstream | 233698 | 29873048 ~ 29876760 (-) | False | LOC113542120 |
| XR_003404262.2 | lncRNA | upstream | 233710 | 29873060 ~ 29876760 (-) | False | LOC113542120 |
| XM_026939311.2 | mRNA | downstream | 1010996 | 28610623 ~ 28620025 (-) | True | flrt3 |
| XM_026939312.2 | mRNA | downstream | 1110192 | 28515778 ~ 28520829 (-) | True | ephx5 |
| XM_026939483.2 | mRNA | downstream | 1125744 | 28504100 ~ 28505277 (-) | True | LOC113542138 |
| XM_026939117.2 | mRNA | downstream | 1129623 | 28499606 ~ 28501398 (-) | True | LOC113541930 |
| XM_026939251.2 | mRNA | downstream | 1134419 | 28494642 ~ 28496602 (-) | True | LOC113542015 |
| XM_034301980.1 | mRNA | upstream | 43195 | 29682545 ~ 29684864 (-) | True | LOC113541985 |
| XM_026939190.2 | mRNA | upstream | 47380 | 29686730 ~ 29695063 (-) | True | zfyve21 |
| XM_026939191.2 | mRNA | upstream | 47380 | 29686730 ~ 29695056 (-) | False | zfyve21 |
| XM_034303164.1 | mRNA | upstream | 134035 | 29773385 ~ 29779069 (-) | True | dact2 |
| XM_026939507.2 | mRNA | upstream | 142913 | 29782263 ~ 29788784 (-) | True | eif3s6ip |
| trnae-cuc_11 | other | downstream | 429018 | 29201932 ~ 29202003 (-) | True | trnae-cuc_11 |
| TU64047 | other | downstream | 1195610 | 28433220 ~ 28435411 (-) | True | G54269 |
| TU63465 | other | downstream | 2089722 | 27537776 ~ 27541299 (-) | False | zgc:163080 |
| XR_003404274.1 | other | downstream | 3720902 | 25910018 ~ 25910119 (-) | True | LOC113542183 |
| XR_004577835.1 | other | downstream | 4895134 | 24682246 ~ 24735887 (-) | False | herc4 |
| LOC113541988 | other | upstream | 40061 | 29679411 ~ 29681726 (-) | True | LOC113541988 |
| TU65059 | other | upstream | 472481 | 30111831 ~ 30122655 (-) | True | G55209 |
| TU65057 | other | upstream | 472684 | 30112034 ~ 30122822 (-) | False | G55209 |
| TU65060 | other | upstream | 472972 | 30112322 ~ 30122655 (-) | False | G55209 |
| XR_004577811.1 | other | upstream | 513558 | 30152908 ~ 30161223 (-) | True | khdrbs1a |
