RNA id: TU64762


Basic Information

Item Value
RNA id TU64762
length 1158
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G54958
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29680526 ~ 29684999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGTTCTAGgataatttttccatttttaattaaaaatattatttgaaaagtaatatatagaataaatattacacataatattttatacatcatcagttattttaaaaaaaaagaatattgtgTATACCTACATGTCTGACAATCGTGTGCACTATTAATCCTTTCACATTCTGgacagtatttaatgatatattTGGAACAGTTCATTTTGTTCAGGTCTACTTAAAGAATCTGTGCAGttataaatgaacacaaataagATTTTACTCACCAAAAGTTACTTCAGTGCCTCCACCGAAAACTGCAGTGTAGCACAGTGTTAGAGCTCAGTACAAATACCTCAGGGCCGTAGCACACTGTTCctgctcacactgaacacttcAGTGATCACGACTATAGAatttaaacacactaaacaggACAAAATGACCATAATTAGGACAGGAAGTGGTGCAGAACTCATAactctgctcatactgaacactagtgtgtgtctgtgtagaaCTGTGAGTGTTTTAGACTGATTCATGGCCAGTTTAGGTCGTGTTGGGGTTTTTGTACGAGGGGATCAATAAACTGCAGCACTGTGCCGCTTCCCTCACAGTTGTGGCAAGCACAGTAATAGACGGCTTCATCTTCAGCCTGAACACCGTTAATATGCAGATATTCTTGCGATCCAGATTCACTGTAAGTGAATCGACTTGGCAGTCCACTCGCTCTGGTGCTATCATATAACAAGAATGCTGGAGATTTTCCTGGTTTTTGTTGGTACCATGTTATGCTCCAGCTACTTGTACTGGGTGAACACAGAATCTTCACATTTTGCCCAGCCTGAACTGATATCGCCTTCTCCTGAGTCAACACAAGAGCTCTCAAACCTAGAGAGTGAGCAAGATGGCGGTGATGGAAACGGTGTTGAGGATCATCATGTTCAGGTCTgtaaagaatgagagaaaagagacgCGCACTTCTTTTGAGAACAGACTcaagctgcacacacacacactgctccttttAAACAGCGTGATAGTTGGGAATCACAGAAGACACACCtccatgagcacacacacacacatgctagaGAAAGGAGAGCAAGCATTACCAGAAATGACATGTGCATGAAAAAGTGCATCAATGGAAACTATGTAAATTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404270.2 lncRNA upstream 206225 29451896 ~ 29474301 (+) True LOC113542173
TU64518 lncRNA upstream 496071 29124493 ~ 29184455 (+) True G54725
TU64516 lncRNA upstream 537146 29118066 ~ 29143380 (+) True G54724
TU63419 lncRNA upstream 1183920 28493548 ~ 28496606 (+) True LOC113542011
TU63425 lncRNA upstream 1196628 28483699 ~ 28483898 (+) True G53702
TU64777 lncRNA downstream 60164 29745163 ~ 29748504 (+) False ablim1a
XR_003404265.2 lncRNA downstream 180757 29865756 ~ 29870830 (+) True LOC113542139
TU64967 lncRNA downstream 454276 30139275 ~ 30139776 (+) True G55129
TU64966 lncRNA downstream 455225 30140224 ~ 30145109 (+) True G55128
TU64971 lncRNA downstream 463102 30148101 ~ 30157041 (+) True G55132
XM_026939342.2 mRNA upstream 319417 29163415 ~ 29361109 (+) False LOC113542066
XM_026939187.2 mRNA downstream 11278 29696277 ~ 29707979 (+) True fam160b1
XM_034303133.1 mRNA downstream 27338 29712337 ~ 29747481 (+) False ablim1a
XM_026939431.2 mRNA downstream 27339 29712338 ~ 29747481 (+) False ablim1a
XM_026939428.2 mRNA downstream 27339 29712338 ~ 29747481 (+) False ablim1a
XM_026939426.2 mRNA downstream 27340 29712339 ~ 29748505 (+) True ablim1a
trnav-aac other upstream 572612 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 575010 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 1232215 28447377 ~ 28448311 (+) True G53692
XR_004577886.1 other upstream 2474131 27197909 ~ 27206395 (+) False znf451
XR_004577899.1 other downstream 27259 29712258 ~ 29747347 (+) False ablim1a
TU64923 other downstream 252549 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 669323 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 794933 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 2100786 31785785 ~ 31796326 (+) True G56222

Expression Profile