RNA id: XM_026939443.2


Basic Information

Item Value
RNA id XM_026939443.2
length 3391
RNA type mRNA
GC content 0.48
exon number 23
gene id ablim1a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29712258 ~ 29748505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTGTAAAAGCCCCACCCTTCCTCTGCACCAGCCTGCTCTTCACTACCTGTACCTTTCTGCCactagaacacacacagcaaggaCGCTCCATCTCAGCACttttctgagtgtgtttgtacCTCtgagcgtgcgtgtgtgtgtgtgtgcgtggctGAATTATTGATGAGTACGGATGCTCAGAATGTCCTGCCAAGGCCATCCTGGGAGTGTGTGAGTAGGAGCGAGCGAGTGTTTATGTCTCGGCAAAGATGGGTGAAAGGAGTGCAGTGCAGCAGCCTGCTTACGATGGATTGTGCAACTACGCCCAAAAAATCACCTCGTGCTTCGGACTTGATGtGACCCACACACACGACGCTCAGCCCCGCCAGGAGAAACCTTCCATCCAGTGCTATAAGTGTGGCGAGCCATGCAAGGGCGAGGTGTTACGAGTGCAGAACAAGCACTTCCATATCAAATGCTTTACATGCAAAGtgtgtggttGCGACCTGGCACAGGGCGGATTCTTTATGAAAAATGGAGATTATCTGTGCACGCTGGACTATCAGCAGATCCACGGCACTCGCTGTAACACATGTGGCGAGTTTGTGGAGGGTGAGGTGGTCACTGCGCTGGGGAAAACCTACCACCCTTCCTGCTTCGTCTGCACCATCTGCAAAAGGCCGTTTCCTGCCGGAGACAGAGTGACGTTCAATGGAAAGGACTGCCTGTGTCAGTACTGTGCTGAGCCCATGTCCCCTGTCCCTTCCAAGGACATCACTGGACCTGGCAcctGTGCAGGTTGTGGCAGAGACATTAAGAACGGACAGGCTTTGCTGGCTTTGGACAGACAGTGGCATTTGGGCTGCTTCAAATGTAAAGCCTGCGGCAAAGTACTTACAGGAGAGTACATCAGCAAAGATGGCGCCCCGTACTGTGAGAAAGATTATCAGATCCATTTCGGAGTGCGGTGCGAAGCCTGCCACCAGTTCATCACTGGCAAAGTGCTGGAGGCAGGTGACAGATACTACCATCCCAGCTGTGCTCGCTGTAGCAGATGCAATCAGATGTTCACTGAAGGAGAGGAGATGTACCTGCAAGgatcgACAGTTTGGCATCCTGGCTGCAAGAGCTCTACAAGAACAGAGGATAGACAAAGGCCGACACGCTCGTCGTCCGAGAGTGTGTGTTCCAGACCTGGTTCAAGCATACCTGGCTCACCGGGTCACACCATATATGCAAAAGTAGACAATGAGATCCTTGATTATAGGGATCTCGCCGCCATTCCCAAAGTCAAAGCCATTTATGACATCGAACGTCCTGACCTGATCAACTATGAGCCACTTTACACCACTTCCCTCGacgagatggaggagagagagagtgtgggaGAGCTTCAGACCTTGAGGCGCGAGCGCTCCCCCATGCCAGATGACCGAACACCAAGAACCATGTCACCAATCCCATCTGCAGATagtTTTTATGACATGAGAGGTCACATCCTGCAGCGGTCTACAAGTCAGGGCTCTATCGGCTCGCCCATCTATAATCGCCACTGTTACACACCAACCATGTCTCGCTCACCCCAGCACTTTCACCGGCCAGGCCCCGAGCCATCCAGCGGGCGGAGCTCCCCTGGGGCCAGCACGCCCCCCCTCCCCCCGACCCCGAAACATTTCCATCTGCCAGATCAGAGCGTCAACATGTACAGGAAGCCACCCATCTACAAACAGCATGGCTCTGAAGGGGGGAGACGGAGATCCCgagaagaggatgaggaggaactCCAGAAACGCAGACAACTCCAGGAAGAACATCTCACCAAGATGCAATCTGGTCTTGGGAAGCTCATCctgaaggaggagaaggaaaagCAGCTGTTTCAAGAACGTCACGCCCGAAGTCTGTCtgcacaaagacaaacaaacgGCAACGCAGATCCAAATTCTCCTGCCAAAACAGGCTCACTCCCTGGCTATGGACGAAGCGGGCTGCATCGCCCTCAGTCAACTGACTTTACACAGTACGACAGTTACGGAGACGTCTCTGGTGGAGGACGAGAGTTTCAGCCCTTGCAGGATGGCCATCGGCCTGTCACCAGAATGGACAGAGGGGTTTCGATGCCTAATATGCTGGAACCAAAAGTATATCCATATGAAATGCTCATGGTCACCAGCCGAGGCCGAATCAAGCTGCCCAGAGATGTGGACAGAACCCGACTGGAGCGACACCTGGCTCCAGAAATGTTCTTTGAGATCTTTGGGATGGAGATTCAGGAGTTCGACAAGTTACCTCTGTGGAAGCGCaatgacatgaagaagaaagcCAGACTCTTTTAAccataaaaacacatcatacatttctGTAATGTAGCCATATATTTGCTTgtaatctctctttctttctctcgtGGGCCTCATGTGTGCATATGGGACGGAATCTGAAGTGATTTCATTGGTTTATGTTTATTGGTTAGCACAACATAATACTAATGGTaccatcattttaaataaaaagtgacaACTCATTGCATTAGCACATACAGTAAGCATCAGATGTTCAGAACTTTGTCTTTATGTCTCTTGGGCTTATTTTCCTCCCAAATggaccttttctttttctgctggCTTCTTCCTCGGTAACTTCCTCTCATGTAAAAAGAAGTTTTTTTAAGTTCATGATGAGTTCATTGTTAACTGAATGTAGTTGTAATGAGCTTTCACGTATGCTTGTATGTTGGTATTTCTTCATGTAAGATGTTATAAGCACTAGTAAGTTCTCCAATTTTCCACATTTACTCCTTCAAAGTCTGCCACTCAAATATTCCTCATTTATCCATATTTTTGTCCTCGTCGTTTAATTATCAAAGCAATGCTGAACTTTACTCAAACTCACATTGTACACttcacaacagaaaagcaagcTGTATCTGGTTAATTTTATTTGAACGGAAACCCGCACTGCCATTTATTGTACGTATGAATGATAATTACAAGTGAAACGATTGATAAACTGTGCGATAGACAGCAACACCAAAGGTATGGCCATGCCTAAGAGAGCAAATTCAGCATTGGGTATTTCTCAGGACTAAGGCTTAATAGGACCAAACGTTTATTGCTCGTGTAAATTACAGTATCAGACACCGACGTCAGAGCAGTTTTTGTTGTAGCTTTGTCTTGGTGGTCGGTCAAAGAATGGCATggcttcttcctctctctctgtcttcacaCTCAAAACCACGCACACAGTAACAAGTTCTTTCAGCTCTGTTTGTTGGTTGAAACTAATTTCCCTGTTAACCCAACTGCTTGCAAAACACAAGGATTTGACAAGCGACAAACATCAACTCTtcatgaatgaaatattttattgatgTAAAAAGCTTCTCGTTAATAAAATGCAGCAAATCAGA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64762 lncRNA upstream 27345 29680526 ~ 29684999 (+) True G54958
TU64763 lncRNA upstream 27345 29684009 ~ 29684999 (+) False G54958
XR_003404270.2 lncRNA upstream 238043 29451896 ~ 29474301 (+) True LOC113542173
TU64518 lncRNA upstream 527889 29124493 ~ 29184455 (+) True G54725
TU64516 lncRNA upstream 568964 29118066 ~ 29143380 (+) True G54724
XR_003404265.2 lncRNA downstream 117251 29865756 ~ 29870830 (+) True LOC113542139
TU64967 lncRNA downstream 390770 30139275 ~ 30139776 (+) True G55129
TU64966 lncRNA downstream 391719 30140224 ~ 30145109 (+) True G55128
TU64971 lncRNA downstream 399596 30148101 ~ 30157041 (+) True G55132
TU64977 lncRNA downstream 414850 30163355 ~ 30164706 (+) True G55138
XM_026939187.2 mRNA upstream 4365 29696277 ~ 29707979 (+) True fam160b1
XM_026939341.2 mRNA upstream 351235 29163586 ~ 29361109 (+) False LOC113542066
XM_026939467.2 mRNA downstream 43396 29791901 ~ 29829883 (+) True smoc2
XM_026939468.2 mRNA downstream 43397 29791902 ~ 29829882 (+) False smoc2
XM_026939038.2 mRNA downstream 160216 29908721 ~ 29925935 (+) True vsir
XM_026939222.2 mRNA downstream 363801 30112306 ~ 30116143 (+) True zmp:0000000634
XM_034302625.1 mRNA downstream 373511 30122016 ~ 30139085 (+) False zbtb8os
trnav-aac other upstream 604430 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 606828 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 1264033 28447377 ~ 28448311 (+) True G53692
XR_004577886.1 other upstream 2505949 27197909 ~ 27206395 (+) False znf451
TU64923 other downstream 189043 29937548 ~ 29941181 (+) True G55091
TU65142 other downstream 605817 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 731427 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 2037280 31785785 ~ 31796326 (+) True G56222
XR_004577804.1 other downstream 2197697 31946202 ~ 31989051 (+) False kcnh5b

Expression Profile