RNA id: TU64791


Basic Information

Item Value
RNA id TU64791
length 3239
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G54977
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29705743 ~ 29709036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGgagaaaatgaatattttaattggGACGGAAAGTATATAAGAaacctagttttttttttttttttttccaaagataCAAAATAGATGCAAGGTGCAACAAGACATGTTTGATGCTGAAACACAATGCTCAGCGTACAGTATGTCAGTGAGGGCTGTAAGAATGCAACTCCTTTCCAATACACATCCCTACTTTAATGGTCTAAGATTGTGAGCATGCAATGCAATGATCTAAACAACAGCTCATTGCTGCATCATGGCAGTGACTTTTGACATTGTGTGTCAATCTGATGCAATGTCGTGAGCTACATTTCGACAAATGCTGCCACCAATCCGTCAAGCAGAACAGTGACTGGTCTGAGTGAATGAAAACCAGGGAAAACACATacttagattaataaaatggaATTTGGTGGCTTTCTACTTAGACTACTCACAAATCATcaccattaaaatgaaaacacatcGTTAAGTGCAAGACTCAAACCCCCAAAAGGGCATACATGCCATCCTCCACTGCACCCAAGTAAGGCATTCGTCACATCTAGGCATGTGTTAATAATCAGTTATgagattacattacatttaacgCTAAGAAACTTTTCTGGGTCGCTTTTCGTGCACCAAACAAGAAAAATGCCTTTTCTTTTTGGCAAGCAGCACAAGGGCAGCTGGCTAAGGTTCAGTATTTTGGTCAAActggagaaaacaaaaatattttatcacagctctaatataaatatgttaagCCTAGTGTTTCGTATGCTGGTTAAATAGGTCTTAAAAGCAGCAAGTTATTTGGAACAAATAAAGAACTTGTGAAAGCCTTATTATAACTGCATCTGAATCAAAGTCAATCAGGAGATGCCTAGTGATCCCCACTGTGCCAAGagtggagaatttttttttcttatccgCTAATGCCTAGTCATAGCCGCATTAATTGGCAACTGAGAGGCTAAAATCGTGaccaagggaaaaaaaaaagagaaaaaaaaaagagagagagaaacaaagaaggggtactttttctttcctcctagAAAGAGTTTGCATGCATTTTACATCactgtacacatatatacatgatTAGAGAAAACCTCTTATGAATTTTATGGTATAAAATGTGCAAGATCAAAAAAATAAGGATCTTTACAATAAACAAGCCACTTGTACATGACAGAACCTTTTCAtactaaaagaaaagaaaaaaaaagttttgcataTGTACAAATTAAATAGGACAATGTTGTCTACTGTGAATGTGCAATTTAATTATATGTCAACTGCAAGTTTGATTAATTGGATCAATATGCAGGGGAGAAAATGTTCTCCAAGTTAAATGGAATTAAAATGCCAAGCAAAAGGGCTTAAATAGGCATGTGCTGGTAATTACATCACAATAACTACCTAATAGGTTTATATCATCTCAGCATGTTTACCAGTAATCACATTTGGGATTTAGCTTCCACTATACATTATAACGTCTAATGTATTGTAAATTCCAATGTGACAGCAGGCTTAAGGCCAGAGACGTGGCCTTTATTCAAGAGCACAAATGGCCATAAATGCTGCCTGCATAAGTATCCtctttgctgtggtataagaggaataaaacacttcagggcatgctgttactgAGTGGTAACCATCCCATCTAggattatgttcctataacagcatgccctgttatGCTGTAATCCTTACAGACTGCAGAATTGATTATCCACACATGCCtacatcaaaaaacaaaacaaaacaaaacaaacaaacaaacaaacaaaaaattataatcCTGCACAGTCCCCTTAATAACAGGCCTTAATTGTTTCACAAATCTGTACAGGAAATGGACAATTTCAGCATTGTAAACCTATGTTTATGCAtttcacagaaaaaataaaagtctgGTTAACACTATTGCTGGTGTATGTTTCAACATAGCTGATAAGGGAAAAAAACCTATGCCAGATGTTCTGTAATAATACTGAAATCATAAGAGAAGCAAAATTCtctaaaattcaaaattcaaatagTAAATTCTTACCCacaataaataactgtaaaacgTGTAAGAGTGACAAGAACAGCTAAATCCTAAAGAAGTAGAAGGCACACACAcgacataaattaaacatacacATGTAAGGCAATGAAGAAGGTAAACCCTTAAAAATGAAAGGTTTCCAAACACTGTCATGAATGTGACGCACAGTTCTCCAAGGACGCTCCAGTGAAATCCGATTTCTGATGTGCAAACCTGCGCAGTCCAATTTGAACATTCAGAGTCCACATTATATCTTTTTACAGATGAAAGAGGGATCAGGACTGAGAAAATGAATAGTATTAAAGCAGATCAGTCTGCTgattctacttttttttttttttttttaagcacagtTCGATTTCTGATCCTGAGTTATCAAAATATCAACATTACAGATAATGGTTTAGGTTGCATATGCATTATTGGATACATAGTCCATCATTTGGTATCATCTCCCCACAAGAAAATAATATAAGCACAGTACTGTAACAACAGCTTATTAAAATtcaattttacacacaattaaTCGGTTTTAGATAaagctcagagctgttttaatTAGCATTTCTAACAGATCAATTTTgacattatgtatatttttagctCTTACAGAACTAATATCTGTTTTGGACAAGAATAAATAAGTGTGTTTCTGTCCGAGGTGAAACACAcaggggattaaaaaaaaaaatctagaagtCAGCAGGTTCATGTGCAAAGCCAGAGgaacaATAAAaggcaaatttaaaaataacatataaaatggcaaaatgaacagagagaagaagagacgaTTTGGATGAAGCGAAAAAGGGATAAAGCACAAAAATATGTATCAAGAGTGCTTCTACAAACACCTTTCCCCATCACACCTGTGCAAGTTTGACCTGTGGGCTTTTTCCTCCAGCCTCATCTCCCCTGCATGTTCTCAGACAGATGAGTGTAGACCCTCTGGATCTTCACAGGCAGGAGCCTGATCTGAAGGATGAATAGGATTCAGTTGGTGGTTCCTGTGCCAGCTTCCCACTCTTGTGTCAAGTCTGAACTGTACCAGTGATGCTTGTGTCCTGGGCACAGTGGGCAGGAGCTCAGGGGGATGTAGACGCAGAAGTGTGGAACTTAACAAATGCGATGGCTGCCAGCTCCTTACAGAACTCCTCCAGGACGATGACTCCCTCCAGCAACGTCACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64790 lncRNA downstream 22218 29680123 ~ 29683525 (-) True G54976
TU64755 lncRNA downstream 66393 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA downstream 66393 29638586 ~ 29639350 (-) False LOC113542002
XR_003404243.2 lncRNA downstream 66404 29631001 ~ 29639339 (-) True LOC113542002
XR_003404254.2 lncRNA downstream 435723 29269096 ~ 29270020 (-) True LOC113542069
TU64885 lncRNA upstream 164012 29873048 ~ 29876760 (-) False LOC113542120
TU64886 lncRNA upstream 164012 29873048 ~ 29876760 (-) False LOC113542120
XR_003404262.2 lncRNA upstream 164024 29873060 ~ 29876760 (-) False LOC113542120
XR_004577796.1 lncRNA upstream 164024 29873060 ~ 29876746 (-) False LOC113542120
XR_004577799.1 lncRNA upstream 164024 29873060 ~ 29876727 (-) False LOC113542120
XM_026939190.2 mRNA downstream 10680 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA downstream 10687 29686730 ~ 29695056 (-) False zfyve21
XM_034301980.1 mRNA downstream 20879 29682545 ~ 29684864 (-) True LOC113541985
XM_026939311.2 mRNA downstream 1085718 28610623 ~ 28620025 (-) True flrt3
XM_026939312.2 mRNA downstream 1184914 28515778 ~ 28520829 (-) True ephx5
XM_034303164.1 mRNA upstream 64349 29773385 ~ 29779069 (-) True dact2
XM_026939507.2 mRNA upstream 73227 29782263 ~ 29788784 (-) True eif3s6ip
XM_034302579.1 mRNA upstream 170259 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA upstream 170259 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA upstream 170259 29879295 ~ 30109197 (-) False cdh23
LOC113541988 other downstream 24017 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 503740 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 1270332 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 2164444 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3795624 25910018 ~ 25910119 (-) True LOC113542183
TU65059 other upstream 402795 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 402998 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 403286 30112322 ~ 30122655 (-) False G55209
XR_004577811.1 other upstream 443872 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 444451 30153487 ~ 30161223 (-) False khdrbs1a

Expression Profile