RNA id: XR_003404262.2


Basic Information

Item Value
RNA id XR_003404262.2
length 1166
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC113542120
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 29873048 ~ 29876760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggtcacagtgcgcatgcgcagtctCCACCGCGCTTTAACTGTTGAGCTCTGGGAGAAGTGTGTGACCATGGCTGGGGTCCTGTGTGGAGACACTTATGTTCCTGTTTTGGCTGGCAAGTGCTACATCCTATCATGTTGTCGCCTGGGCTTTTGCCATTTCCTGCTCTACTGTACACAGAGCCATCCATAATGTGAGCAGGAAATGTTTGGCATCATGAGAAGAGTCATCTCGCTTCCCTCTGCTGACGACCTGCCTGCAGTGGGCAATGGACTTGCCAGGCCGGCTGGGTCCGCTGTATTTAATAAGGTGGTGGGCAGCATTGATGGATGCCATCTCTCCCAGCCAATTAAACTGATGACTCCTTACAGACACCCTCTTCACTGACTACTGACTGGTTTAACCCGTGGCTTCAACACAAGCAGTGCAGCATTTATTGATGTgcaagagacagacaaaataaGGGCTGTTGTTCTAAATCTGTCCAGCAGAGTCATCCCAGTGCTTGAGCAGCTTAGGAAAAGCCTGCTGCTGTGACCTCctgagaattttaaaaaagagtcaCCCAGAACTGTTTGATAGGTAGACACAGCTTTTATTCTGCAGGTGTGCCACCTGGTCTTCAGTGAGAAAGCATCTCTGAAATACAGCATGGAAATAAGACGTCCTACAGGAAATTGAGGAGCATGGTTCTAGCCATATGTAAAATAACACAGTGTTACCTGTCACACTAACCTCTTTTCAgtcttttattttgtaatgataaGGTGAACATGGAGAAGTTGCTTGTGATGGGGTGTGAAGGAAATTCAACACTGCAGTTCCTTTTGCAGTTCCTCCAgtctttttatttacactgtgtAAACAACATTCCATGTGACAACTTTGCTTTTTGTTGCAGTAAGTtaatattaacaaaacatttcttCTCTAGCTATTATTTTGGTTACTATCAGCAGGCCTCTTTTATCactcttttagtaaagttgtgtgtaaatatttttgtaggCCAAAGCGAACTAAAACTTGCCATCAAATCTGCCAACTTATGTACCGCTGACTTTTCTTCATACTCTTGTaggtatgttgataaatgccaatatCTTTGCATTTAAGGCTTTGTATAAATCTTTATAGTTTTCTTGTTTCTCAGTCCAtactgtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64791 lncRNA downstream 164024 29705743 ~ 29709036 (-) True G54977
TU64790 lncRNA downstream 189535 29680123 ~ 29683525 (-) True G54976
TU64755 lncRNA downstream 233710 29631021 ~ 29639350 (-) False LOC113542002
TU64754 lncRNA downstream 233710 29638586 ~ 29639350 (-) False LOC113542002
XR_003404243.2 lncRNA downstream 233721 29631001 ~ 29639339 (-) True LOC113542002
TU65018 lncRNA upstream 171670 30048430 ~ 30049700 (-) False cdh23
TU65077 lncRNA upstream 285991 30162751 ~ 30162970 (-) True G55220
TU65051 lncRNA upstream 321565 30198325 ~ 30200157 (-) False runx3
TU65128 lncRNA upstream 462717 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 463648 30340408 ~ 30344538 (-) False rsrp1
XM_026939507.2 mRNA downstream 84276 29782263 ~ 29788784 (-) True eif3s6ip
XM_034303164.1 mRNA downstream 93991 29773385 ~ 29779069 (-) True dact2
XM_026939190.2 mRNA downstream 177997 29686730 ~ 29695063 (-) True zfyve21
XM_026939191.2 mRNA downstream 178004 29686730 ~ 29695056 (-) False zfyve21
XM_034301980.1 mRNA downstream 188196 29682545 ~ 29684864 (-) True LOC113541985
XM_034302579.1 mRNA upstream 2535 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA upstream 2535 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA upstream 2535 29879295 ~ 30109197 (-) False cdh23
XM_026939035.2 mRNA upstream 2535 29879295 ~ 30109197 (-) False cdh23
XM_034302581.1 mRNA upstream 86394 29963154 ~ 30109197 (-) False cdh23
LOC113541988 other downstream 191334 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 671057 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 1437649 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 2331761 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 3962941 25910018 ~ 25910119 (-) True LOC113542183
TU65059 other upstream 235071 30111831 ~ 30122655 (-) True G55209
TU65057 other upstream 235274 30112034 ~ 30122822 (-) False G55209
TU65060 other upstream 235562 30112322 ~ 30122655 (-) False G55209
XR_004577811.1 other upstream 276148 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 276727 30153487 ~ 30161223 (-) False khdrbs1a

Expression Profile