RNA id: TU64971


Basic Information

Item Value
RNA id TU64971
length 1336
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G55132
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30148101 ~ 30157041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAAAGAAGCATGGCATTGTCAGAActaacagaaaaacatttatataatgatataatgataacatctagaaaattaattatataattatgatTCAATTATAAAAGTTTGGACATGATTTGAACCAACTTTTGAACTAAGTCAGTTCTTTTTGTTACAGCAGTATGCATTTATGCTTtagaaatatgcaaaatatattaCCCATGACAATTTGATCTCCTTATAATAAAAACAGTCTACATCAAATAGCCTATGTGAAATCCATGTGAAAGGTTTTCAGTAAGGAAAAAGCCAATCTCTTTTTCTTCCGCAAACTTTAAAATAGGCTGGAGGGAAGAAAACACGAGGTTACATAACAGTCGCTGCACTCACAGAGTATATGAGGCAGAGTGCAAgagcatttacaacatttacatCTCTGATCTTTTTGAGTTGAGATGTACTTGCACCCTTGTGTCCAGTGCCAAATTCCACACGCACGTGCCAAACAGTACTGATCAATGATATTTCCTACCTGCAGATGAACccaggatgatgaggatgagaaaGGTGTAGTGCAGTAATGCACTGTGATGTCGTACTTCATGCATTACTGTTCCTACTGCACTGCCAAACTCGtcgagacagacagacaacaaaACAGCTGAGGTCATTCTATAAATACCCTCCTCTTACCCCTGTGCCGCCCCTCTTCTTCACGCAAAAAGTTCTTGAAGTtagagtgctttttttttttttttgaaacttgCCCTCTTCTTCTACTTTCAGTATGAATATAAGCAATACTGCAGCTTTGGATATGCGTCACAGGGGTGATAATAATATGCCGTGCTGTGGTGGTCAGTAGGTGGCccctgattggtcagcaggtcAGTGCGTTGTTTCAGTAGGTTTCAGTGGACAGTAGGTCCGGCTGCAACATGAGCCACAGGGTGATATTAATGCGCATATATACTGTCTCTATAGTCATGTAGAGTTTCAATATTTTATGAAGATATATTGTTtttgacaaagaaaaacgtataattgttgaaatggtaacatttattcaacatttacgGGAGGAGTTCCGGTTGCATGAACAACGTGGCTACTCACGTATTCCTCGTACGATTCTGGTGCTTGATGCTGCTGATGAGAGAGCGCGGGTGCAGGTGCCATCCTCTGCGAGGCAGTGGGGGGTCGGGACCGTCCTGCAGCTCCTCCGCGGTTAGTGGAGGCAGAAGGATGTCCGCCCCGGCCCACGGGTGCTCCTCTAGCTGCTCCACCTCTTCCTGGGCCTCCTCTGGGGGCACCGCCACGAGGGGCACCGCCACGTGGGAGCATGCCACGACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64966 lncRNA upstream 2992 30140224 ~ 30145109 (+) True G55128
TU64967 lncRNA upstream 8325 30139275 ~ 30139776 (+) True G55129
XR_003404265.2 lncRNA upstream 277271 29865756 ~ 29870830 (+) True LOC113542139
TU64777 lncRNA upstream 399597 29745163 ~ 29748504 (+) False ablim1a
TU64762 lncRNA upstream 463102 29680526 ~ 29684999 (+) True G54958
TU64977 lncRNA downstream 6314 30163355 ~ 30164706 (+) True G55138
TU64993 lncRNA downstream 69996 30227037 ~ 30231451 (+) True G55152
XR_004577830.1 lncRNA downstream 71170 30228211 ~ 30294334 (+) True LOC117596843
XR_004577829.1 lncRNA downstream 71170 30228211 ~ 30254469 (+) False LOC117596843
TU65111 lncRNA downstream 112743 30269784 ~ 30293585 (+) False LOC117596843
XM_034302625.1 mRNA upstream 9016 30122016 ~ 30139085 (+) False zbtb8os
XM_026939223.2 mRNA upstream 9016 30122562 ~ 30139085 (+) False zbtb8os
XM_026939224.2 mRNA upstream 9016 30122705 ~ 30139085 (+) True zbtb8os
XM_026939222.2 mRNA upstream 31958 30112306 ~ 30116143 (+) True zmp:0000000634
XM_026939038.2 mRNA upstream 222166 29908721 ~ 29925935 (+) True vsir
XM_026939039.2 mRNA downstream 171714 30328755 ~ 30333667 (+) True syf2
XM_026939152.2 mRNA downstream 197262 30354303 ~ 30358440 (+) True mgst3b
XM_026939504.2 mRNA downstream 203344 30360385 ~ 30367419 (+) True tmem50a
XM_026939172.2 mRNA downstream 221484 30378525 ~ 30395734 (+) True maco1b
XM_026939176.2 mRNA downstream 244260 30401301 ~ 30438810 (+) True ldlrap1b
TU64923 other upstream 206920 29937548 ~ 29941181 (+) True G55091
XR_004577899.1 other upstream 400754 29712258 ~ 29747347 (+) False ablim1a
trnav-aac other upstream 1040187 29107842 ~ 29107914 (+) True trnav-aac
trnav-cac other upstream 1042585 29105444 ~ 29105516 (+) True trnav-cac
TU63410 other upstream 1699790 28447377 ~ 28448311 (+) True G53692
TU65142 other downstream 197281 30354322 ~ 30358454 (+) False mgst3b
TU65162 other downstream 322891 30479932 ~ 30486287 (+) False LOC113542119
TU66180 other downstream 1628744 31785785 ~ 31796326 (+) True G56222
XR_004577804.1 other downstream 1789161 31946202 ~ 31989051 (+) False kcnh5b
TU66551 other downstream 2327935 32484976 ~ 32487366 (+) False zfyve26

Expression Profile