Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU64977 |
| length | 1284 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G55138 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 30163355 ~ 30164706 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU64971 | lncRNA | upstream | 6314 | 30148101 ~ 30157041 (+) | True | G55132 |
| TU64966 | lncRNA | upstream | 18246 | 30140224 ~ 30145109 (+) | True | G55128 |
| TU64967 | lncRNA | upstream | 23579 | 30139275 ~ 30139776 (+) | True | G55129 |
| XR_003404265.2 | lncRNA | upstream | 292525 | 29865756 ~ 29870830 (+) | True | LOC113542139 |
| TU64777 | lncRNA | upstream | 414851 | 29745163 ~ 29748504 (+) | False | ablim1a |
| TU64993 | lncRNA | downstream | 62331 | 30227037 ~ 30231451 (+) | True | G55152 |
| XR_004577830.1 | lncRNA | downstream | 63505 | 30228211 ~ 30294334 (+) | True | LOC117596843 |
| XR_004577829.1 | lncRNA | downstream | 63505 | 30228211 ~ 30254469 (+) | False | LOC117596843 |
| TU65111 | lncRNA | downstream | 105078 | 30269784 ~ 30293585 (+) | False | LOC117596843 |
| TU65146 | lncRNA | downstream | 209145 | 30373851 ~ 30375488 (+) | True | G55283 |
| XM_034302625.1 | mRNA | upstream | 24270 | 30122016 ~ 30139085 (+) | False | zbtb8os |
| XM_026939223.2 | mRNA | upstream | 24270 | 30122562 ~ 30139085 (+) | False | zbtb8os |
| XM_026939224.2 | mRNA | upstream | 24270 | 30122705 ~ 30139085 (+) | True | zbtb8os |
| XM_026939222.2 | mRNA | upstream | 47212 | 30112306 ~ 30116143 (+) | True | zmp:0000000634 |
| XM_026939038.2 | mRNA | upstream | 237420 | 29908721 ~ 29925935 (+) | True | vsir |
| XM_026939039.2 | mRNA | downstream | 164049 | 30328755 ~ 30333667 (+) | True | syf2 |
| XM_026939152.2 | mRNA | downstream | 189597 | 30354303 ~ 30358440 (+) | True | mgst3b |
| XM_026939504.2 | mRNA | downstream | 195679 | 30360385 ~ 30367419 (+) | True | tmem50a |
| XM_026939172.2 | mRNA | downstream | 213819 | 30378525 ~ 30395734 (+) | True | maco1b |
| XM_026939176.2 | mRNA | downstream | 236595 | 30401301 ~ 30438810 (+) | True | ldlrap1b |
| TU64923 | other | upstream | 222174 | 29937548 ~ 29941181 (+) | True | G55091 |
| XR_004577899.1 | other | upstream | 416008 | 29712258 ~ 29747347 (+) | False | ablim1a |
| trnav-aac | other | upstream | 1055441 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| trnav-cac | other | upstream | 1057839 | 29105444 ~ 29105516 (+) | True | trnav-cac |
| TU63410 | other | upstream | 1715044 | 28447377 ~ 28448311 (+) | True | G53692 |
| TU65142 | other | downstream | 189616 | 30354322 ~ 30358454 (+) | False | mgst3b |
| TU65162 | other | downstream | 315226 | 30479932 ~ 30486287 (+) | False | LOC113542119 |
| TU66180 | other | downstream | 1621079 | 31785785 ~ 31796326 (+) | True | G56222 |
| XR_004577804.1 | other | downstream | 1781496 | 31946202 ~ 31989051 (+) | False | kcnh5b |
| TU66551 | other | downstream | 2320270 | 32484976 ~ 32487366 (+) | False | zfyve26 |
