RNA id: TU65051


Basic Information

Item Value
RNA id TU65051
length 1833
lncRNA type sense_over
GC content 0.39
exon number 1
gene id runx3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30198325 ~ 30253456 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaccaagcaaaacaaaatgacGAGGAACCCTATCCACGAAAAAACAAGTCCAAAGAAGTCAGATTTCATCGTAATAACTTATAATCGATTATACTTCAAGGCACGATGGCTCGCTTTCCTTTTGTTGCCCAAAGTGTTACATTTTATGATGTCATCCCAGCCTCATAAAGAATGAAGAACACACGTAGCTTTAAGCGCCTTCATTATCCATCTTTCCTCGCATCAATGAGGCGACTGAAATGGTAGATGATAACTACATATGAAATGGATCGTCTCTCATTATTTCAATGacaaaagcacacacaagcTCGCACATTGGAGCTAAAGTGGCCAGAAATCTGTCCCTCCCTTcctttcaggtgtgtgtgtgtgtgttgtgcacaATAGGTCATCAGCCAGAGGCCTTTCCCAGCCGCTCGCACTCCGCCACACCTGCTCTCCGTACCTAAAGGGAGAACGAGGAcgaaaagagagagtgtgtgccgCGGAGTGTGGGAGTGAGATCGTCTTTCAGCGACCGCCAGCCATTCTTTAGGCCACTGGTTCTCCTAATGCTGCCTTCTTTGTTCACTCTGCTCCAAAGCCACTTTGAAGCCTTTGTGATGGCGCTTcgtctctttttcttttgtcgTTTGTACATAATTAACGTCCTGAGCCCGAGGCCATGGCTGACATTGAGCGAGCCAGTGTGTGAGAAGTTCCTATAGAACAGAGGAAGGAGAAAACTGTTGttccacaaaataaaagaattaagtTTAGAAAGCAACCAGCATCCACCTCTGCTATACGGATCTCCTTTGTCTCTGGGATTATAGTGTTGAGGACGATTCCATTTTTCCAGACTTGGGTTTGCGATGTTTGCTAACGACAATCCAGTCAGTTTGACTCAGGAAACaactatgacacacacactatgccTTATAATGCTTCATGACAGCATCATATTTGATGTATAACAAAAGCACAATCAAAGTTCTTTATAGTTGCAACTATAAAGTGgacatctatccatccatcatccaatCTCTTGGCTTAGTGAAATGACCAAAGCTACGTGTTTATTAATTTGAGGCATTTTGTAGTTTTCATGGCTGGTCTGTTGACGTGCATGCCCAAACACCTGAAGAATAGAGGACTGCAAACTCTTGCGTTACGTGTGCTGAGTGTAACACCAAGAGCTCAGTGGTTCCTTCCCTAAAGAACAAATAGTGTTTTTTCATTCACTGTATATTGTAATTTTTGACTCTGTACCATGCTCTGCTATAGTCTACCTTCATTGTGTGCAAACAATGTAGTTTttgatgcattttaattaaaaaaaaaaaaaaagtcacgttTTGTGTTTGGCTTGTATTTggaattttagtcatttttattcACTACATGAACACAGTACAGTATTTGACACAACAACACAATAagcacaataaaataaagtagcaCAATAAAATATGAGGGGAAAATGAAATAATAGATTACTTTaggattttgttgttttgatcaAATCAAACATCCTTTTGATTTATTAGATTTGTTTATTGGGATATCCAGGAGCCAAAATGTTATACACGTAGTAATTGTCCatggggtcaaatatgcagccAAAGTAAATATCTTGCATCTTCAAGGTCAGAAGGTTGAAGAGAAAAATACTTGTGTAGTAAACGAAGCTTTTATCTCAAATAATCTAAGGGGTGATGGCTCAGAGAGAATATATACACGTAAAGTTCATTTTCCCAAATCTACTTCAGGTCACTTTAAGAAGATTATTTAAGAACACGTTTTTATCATCTCAATGGAAAAtaacatacattcatacattcatttgtG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65077 lncRNA downstream 35355 30162751 ~ 30162970 (-) True G55220
TU65018 lncRNA downstream 148625 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 321565 29875406 ~ 29876760 (-) False LOC113542120
XR_003404261.2 lncRNA downstream 321611 29873060 ~ 29876714 (-) False LOC113542120
TU65128 lncRNA upstream 139320 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 140251 30340408 ~ 30344538 (-) False rsrp1
TU65226 lncRNA upstream 147013 30347170 ~ 30387537 (-) True G55349
TU65232 lncRNA upstream 155414 30355571 ~ 30414469 (-) True G55351
TU65230 lncRNA upstream 157797 30357954 ~ 30386396 (-) False G55351
XM_026939415.2 mRNA downstream 23205 30163347 ~ 30175120 (-) True chp1
XM_034302618.1 mRNA downstream 37101 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939471.2 mRNA downstream 49401 30140946 ~ 30148924 (-) True LOC113542130
XM_034302580.1 mRNA downstream 89128 29879295 ~ 30109197 (-) False cdh23
XM_034303117.1 mRNA upstream 140242 30340399 ~ 30343584 (-) False rsrp1
XM_034303167.1 mRNA upstream 144964 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA upstream 144964 30345121 ~ 30352293 (-) False eif2ak2
XM_034303166.1 mRNA upstream 144964 30345121 ~ 30352293 (-) False eif2ak2
XM_026939516.2 mRNA upstream 144964 30345121 ~ 30352293 (-) True eif2ak2
XR_004577811.1 other downstream 37102 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 37102 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 75503 30112034 ~ 30122822 (-) False G55209
TU65059 other downstream 75670 30111831 ~ 30122655 (-) True G55209
TU65130 other upstream 140251 30340408 ~ 30344538 (-) True rsrp1
trnag-gcc_2 other upstream 555249 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 651780 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 660279 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1346203 31546360 ~ 31548633 (-) False LOC113541990

Expression Profile