RNA id: TU65057


Basic Information

Item Value
RNA id TU65057
length 1376
RNA type TUCP
GC content 0.48
exon number 2
gene id G55209
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30111831 ~ 30122822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAACTTCGGGGTTGAGTCTGATATCAAGACTCAACAAGTTTAGTGTCATATGCACAAGGATCTTGCGATAACCATATCTAGCTGAGCTCGTGATATCTTCTGTTCTTCCTCTGCTCTGATAAACATGTTAGAGTACGTACATTCCGTGAAACACATCCATCACCACTTGTTTTCTGCTGATGGCTTGGTCTCTGCAGACACTGCACCCTGTGGTCAGCAGAAATACTCCCTGTCTGCCTCAGTAAAGCGCTTGACTGCTCCATCACTGACTCTGTGCGGCTCACACTTCCTCTCTGAATCCGAGGGAAATAACTGTATCAGCTCTCTGGGGCTCGTCCGGGATCAGCAGCGGGAGtaAGCAGCTGGGTTTTCTCTCGGAGAGATGATGGGAATGTGGGTCACATCGATTGCCCCAGCACACATGGGATATCCGCGTCCTGCAAACCCCCTGAGCGTGTTCTGAAGAAGCTCTCCTTCTGGCAGGCAGATGAACTGTTTGAGAAGGCTGGTGTTCAGGGCAGAGGTGACCTGGCGCACTAAAGTGCACACAGTGGACAGTCCTACTCCGAAGAGACAGCTGATGGTCCTGTACTCGCTCGGGGTCGCGTACCACCACAGCACGATGGCCAGCCTGCGCCGCGGCTCCAGCGCTTTTCTCCAGCGAGTCGACTTGCGTCTCAGTTTCTCTTCCACAAGTCCTAGTATGAACTCAAATGTGCTCCGGGACATGCGGAAATGATCCACCCACTGCTCATCATCAAAGTTAGCCAGGACATTGGACCAGAACACTTCTCCATGgggtctctctctcctccacacTCGTCTCTCCAGACCGTGCAGGTGGAGGAGTCGGGTGCACAGCGCCAAGGCTCTCAGCCTCACATAGCGTCTCCGAGCTCTGCGCCGGGCGGCTTCATATTCCCTCCTGCTCCGCTCCAGCTTTTCATCCAGCGAGCTTCTTATATCCAGAACACGACTCTGGGAGCTCAGTAACCCATTACACAACACTAATTGTTTTGAAAACGTGTGGAAAAGTAACAACATAGTCGCCGAATCGACGCTGGACACCGCTGACAGCTCACGCGCCATTATTATCAAACAAACTAACTTCCGGCGCACGAAAGAGACGTCACATCAATAAATTAGTTCGGTATATTTTTGTCAGTTAAAACTGTAAACAGTGTAGACATCAATTTTagagaagtgtttttttattttgaatttaataataCTTCATGGAAATACAATTTACATAAAGCCAAACaaggaaaatggaaataattattttttatattgcatCTCTAAAAACCTGTCTACTATCCCCTATTTGACAGAAGTAAAATTGTTAGAGGATTAAAATATGTTGTCACCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65018 lncRNA downstream 62334 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 235274 29875406 ~ 29876760 (-) False LOC113542120
XR_003404261.2 lncRNA downstream 235320 29873060 ~ 29876714 (-) False LOC113542120
TU65077 lncRNA upstream 39929 30162751 ~ 30162970 (-) True G55220
TU65051 lncRNA upstream 75503 30198325 ~ 30200157 (-) False runx3
TU65128 lncRNA upstream 216655 30339477 ~ 30339850 (-) True G55270
TU65129 lncRNA upstream 217586 30340408 ~ 30344538 (-) False rsrp1
TU65226 lncRNA upstream 224348 30347170 ~ 30387537 (-) True G55349
XM_034302579.1 mRNA downstream 873 29879295 ~ 30111161 (-) True cdh23
XM_026939036.2 mRNA downstream 2514 29879295 ~ 30109520 (-) False cdh23
XM_034302580.1 mRNA downstream 2837 29879295 ~ 30109197 (-) False cdh23
XM_026939035.2 mRNA downstream 2837 29879295 ~ 30109197 (-) False cdh23
XM_034302581.1 mRNA downstream 2837 29963154 ~ 30109197 (-) False cdh23
XM_026939471.2 mRNA upstream 18124 30140946 ~ 30148924 (-) True LOC113542130
XM_034302618.1 mRNA upstream 32265 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939415.2 mRNA upstream 40525 30163347 ~ 30175120 (-) True chp1
XM_026939142.2 mRNA upstream 77331 30200153 ~ 30253456 (-) True runx3
XM_034303117.1 mRNA upstream 217577 30340399 ~ 30343584 (-) False rsrp1
LOC113541988 other downstream 430308 29679411 ~ 29681726 (-) True LOC113541988
trnae-cuc_11 other downstream 910031 29201932 ~ 29202003 (-) True trnae-cuc_11
TU64047 other downstream 1676623 28433220 ~ 28435411 (-) True G54269
TU63465 other downstream 2570735 27537776 ~ 27541299 (-) False zgc:163080
XR_003404274.1 other downstream 4201915 25910018 ~ 25910119 (-) True LOC113542183
XR_004577811.1 other upstream 30086 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other upstream 30665 30153487 ~ 30161223 (-) False khdrbs1a
TU65130 other upstream 217586 30340408 ~ 30344538 (-) True rsrp1
trnag-gcc_2 other upstream 632584 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 729115 30851937 ~ 30852007 (-) True trnag-gcc_3

Expression Profile